Molecular characterisation of indigenous Swedish apple cultivars based on SSR and S-allele analysis

Garkava-Gustavsson, Larisa; Brantestam, Agnese Kolodinska; Sehic, Jasna; Nybom, Hilde

doi:10.1111/j.0018-0661.2008.2042.x

Cited by 15 publications

(32 citation statements)

References 41 publications

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“…In plant germplasm characterization, duplicates and mislabeling of accessions might occur, which are unwanted, costly and time consuming (Gustavsson et al 2008). In these cases, molecular markers are very useful to detect identical, synonymous and homonymous accessions, and also to help breeders to form their core collections (Gross et al 2012).…”

Section: Ghf Klabunde Et Almentioning

confidence: 99%

“…Among the molecular ones, microsatellite markers (SSR-simple sequence repeats) are highly polymorphic, multiallelic, co-dominant, reproducible and are distributed throughout the entire genome, making them ideal for revealing genetic diversity (Morgante et al 2002). Therefore, the use of molecular markers to access the apple germplasm is a trustworthy tool (Gustavsson et al 2008, Zhuang et al 2011, Potts et al 2012, Reim et al 2013, Burak et al 2014. Almost 400 microsatellite markers have already been identified and mapped in Malus and other fruit species (Guilford et al 1997, Liebhard et al 2002, Silfverberg-Dilworth et al 2006, Han and Korban 2008.…”

Section: Ghf Klabunde Et Almentioning

confidence: 99%

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Genetic diversity and apple leaf spot disease resistance characterization assessed by SSR markers

Klabunde

Junkes

Tenfen

et al. 2016

Crop Breed. Appl. Biotechnol.

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Section: Ghf Klabunde Et Almentioning

confidence: 99%

Section: Ghf Klabunde Et Almentioning

confidence: 99%

Genetic diversity and apple leaf spot disease resistance characterization assessed by SSR markers

Klabunde

Junkes

Tenfen

et al. 2016

Crop Breed. Appl. Biotechnol.

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“…among the different molecular markers, microsatellites (or SSrs) have been the most widely applied for cultivar identification and characterization of germplasm resources, because of their high variability and reproducibility, their random occurrence in the genome, co-dominant inheritance and selective neutrality as well as the potential for analysis on automated systems (e.g. garkava-gustavsson et al 2008;guarino et al 2006;Hokanson et al 1998;Pereiralorenzo et al 2007). a collaborative study involving the Molecular Biology laboratory and the institute of Plant Sciences of the University of graz addressed the potential for the exchange of genotyping data produced in different laboratories, since the integration of different datasets would be useful for direct comparisons of the genetic diversity of germplasm resources within and among regions or for identification of synonym or homonym cultivars (Baric et al 2008b).…”

Section: Molecular Markers For Identification Of Apple Cultivarsmentioning

confidence: 99%

Molecular Tools Applied to the Advancement of Fruit Growing in South Tyrol: a Review

Baric

2012

Erwerbs-Obstbau

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Molecular biology techniques have become indispensable tools in various areas of research and routine applications. in South tyrol (northern italy), molecular methods have been applied to the field of fruit growing over the last decade, and the main applications have been related to plant pathology and identification of apple cultivars. this review article illustrates how the implementation of existing methods and the development of new assays have contributed to gain more insights about the spread and epidemiology of phytoplasma diseases affecting apple trees and grapevine in South tyrol, to identify and characterise the causal agents of newly emerging disorders, or to describe the local genetic diversity of the apple. Anwendung molekularbiologischer Methoden im Obstbau Südtirols - ein ÜberblickZusammenfassung Molekularbiologische Methoden haben sich zu einem unverzichtbaren Hilfsmittel in verschiedenen Bereichen der Forschung und in routineanwendungen entwickelt. in Südtirol (norditalien) werden molekularbiologische Methoden seit einem Jahrzehnt im Bereich des Obstbaus angewandt, mit Schwerpunkt auf Pflanzenkrankheiten und die identifizierung von apfelsorten. Dieser review zeigt den Beitrag der implementierung bestehender Verfahren und der entwicklung neuer Methoden zur gewinnung profunder erkenntnisse über die ausbreitung und epidemiologie von Phytoplasmen-Krankheiten des apfels und der rebe in Südtirol, zur identifizierung und charakterisierung neuer Schaderreger sowie zur Beschreibung der lokalen genetischen Vielfalt des apfels.Schlüsselwörter apfeltriebsucht · Schwarzholzkrankheit · Weißdornblattsauger · Sommerapfelblattsauger · 'Candidatus Phytoplasma mali' · 'Candidatus Phytoplasma prunorum' · Sortenbestimmung · Erwinia amylovora · europäische Steinobstvergilbung · Feuerbrand · goldgelbe Vergilbung · Vergilbungskrankheiten der rebe · Winden-glasflügelzikade · latente infektion · apfel · Mikrosatelliten Dna · Molekulare Diagnostik · Molekulare typisierung · erreger-Quantifizierung · real-time Pcr · Wurzelverwachsung · amerikanische rebzikade · Tilletiopsis spp. · Vektor · rebe · Weißer Hauch erwerbs-Obstbau (2012) 54:125-135

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“…One of them, Research and Breeding Institute of Pomology Holovousy is the national centre for maintaining and preservation of apple genetic resources (1,087 cultivars). Accurate and permanent identification of plant material within a germplasm collection is of utmost importance, especially for vegetatively propagated crops which are expensive to maintain, and should consist of a single genotype in the whole distribution area (Garkava-Gustavsson et al 2008).…”

mentioning

confidence: 99%

“…During the past 10-15 years, microsatellites or simple sequence repeats have become the markers of choice for verification of cultivar identity and for diversity studies due to their abundance in plant genomes, large number of alleles per locus and high informativeness, codominant inheritance, and suitability for automatization (Garkava-Gustavsson et al 2008). For apple, several hundreds of microsatellite markers were developed (Guilford et al 1997;Hokanson et al 1998;Liebhard et al 2002;Silfverberg-Dilworth et al 2006).…”

mentioning

confidence: 99%

Genetic diversity of Czech apple cultivars inferred from microsatellite markers analysis

Patzak¹,

Paprštein²,

Henychová³

et al. 2012

Hort. Sci. (Prague)

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Patzak J., Paprštein F., Henychová A., Sedlák J., 2012. Genetic diversity of Czech apple cultivars inferred from microsatellite markers analysis. Hort. Sci. (Prague), 39: 149-157.Genetic diversity and genetic relationships of Czech apple cultivars were evaluated. Trees of 33 Czech apple cultivars and 97 reference foreign cultivars were analysed using the set of 10 SSR (simple sequence repeat) primer pairs. The total of 89 polymorphic alleles were amplified, while the number of alleles per locus ranged from 4 to 14. The SSR dendrogram, based on the Jaccard's similarity coefficient, divided apple cultivars into three major groups: Cox's Orange Pippin, McIntosh and Golden Delicious ancestries. The clustering highly depended on pedigree and origin of apple cultivars. Spontaneous mutated cultivars were identical with their progenitors. We proved that microsatellite markers were useful for evaluation of genetic resources, collection management and cultivar identification.

show abstract

Molecular characterisation of indigenous Swedish apple cultivars based on SSR and S-allele analysis

Cited by 15 publications

References 41 publications

Genetic diversity and apple leaf spot disease resistance characterization assessed by SSR markers

Genetic diversity and apple leaf spot disease resistance characterization assessed by SSR markers

Molecular Tools Applied to the Advancement of Fruit Growing in South Tyrol: a Review

Genetic diversity of Czech apple cultivars inferred from microsatellite markers analysis

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