Raw milk is one of the most important vehicles for transmitting various pathogens, especially
Escherichia coli
(
E. coli
). Multidrug-resistant pathogens are highly prevalent among mastitic cows in various dairy farms worldwide. Therefore, our current study is based on the identification of
E. coli
from mastitic cow’s milk and their resistance to various antibacterial agents. As well, the impact of camel’s urine on multi-drug resistant
E. coli
were also evaluated. Thirty-three
E. coli
isolates were recovered from 254 milk samples. All strains were initially identified phenotypically by culturing on specific media and Vitek 2 Compact System. The protein fingerprinting technique was used as a confirmatory method. The
Stx1
,
Stx2
and
eae
genes were also verified by polymerase chain reaction (PCR). The antimicrobial resistance of
E. coli
strains was tested by the Vitek 2 AST-GN69 cards. Thirty multi-drug resistant
E. coli
strains (20 from mastitic milk and 10 from clinical samples) were laboratory tested with different concentrations (100%, 75%, 50% and 25%) of virgin and breeding camel’s urine, using the paper disc diffusion method. Our findings showed that 93.94% of
E. coli
strains were recognized by the Vitek™ 2 system. The results of proteomic investigation illustrated that 100% of
E. coli
strains were identified at log values ≥2.00. The genotypic identification of the three virulence genes illustrated that 90.1%, 63.64%, and 30.55% of
E. coli
strains were able to carry the
Stx1
,
eae,
and
Stx2
genes, respectively. Most strains of
E. coli
showed strong resistance against cefazolin (78.79%), ceftazidime (66.67%), cefotaxime (60.61%), ceftriaxone (54.55%), and cefepime (39.40%). The results of the antibacterial effect of camel’s urine revealed that the mean inhibitory zones of virgin camel’s urine were 28 mm, 17 mm, and 14 mm, for the concentrations of 100%, 75%, and 50%, respectively. Whereas; the inhibitory zones for the breeding camel’s urine were 18 mm, 0 mm, and 0 mm, for the concentrations of 100%, 75%, and 50%, respectively. We concluded that the majority of
E. coli
strains were able to harbor some virulence genes and resist many antibiotics. Our study also provided a robust evidence that the camel’s urine, particularly from the virgin camels has robust antimicrobial activity against multidrug-resistant
E. coli
strains.