2016
DOI: 10.1007/s10658-016-1055-y
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Molecular characterization of Prune dwarf virus cherry isolates from Slovakia shows their substantial variability and reveals recombination events in PDV RNA3

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Cited by 14 publications
(24 citation statements)
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“…The largest diversity among the three groups was observed between group 1 and group 3 (0.103 ± 0.011). The average divergence of 0.040 ± 0.004 within the Bulgarian isolates (not shown) was less than that reported for cherry isolates from Hungary (0.081 ± 0.007), Turkey (0.080 ± 0.005) and Slovakia (0.076 ± 0.076) [13].…”
Section: Phylogenetic and Sequence Identity Analysiscontrasting
confidence: 56%
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“…The largest diversity among the three groups was observed between group 1 and group 3 (0.103 ± 0.011). The average divergence of 0.040 ± 0.004 within the Bulgarian isolates (not shown) was less than that reported for cherry isolates from Hungary (0.081 ± 0.007), Turkey (0.080 ± 0.005) and Slovakia (0.076 ± 0.076) [13].…”
Section: Phylogenetic and Sequence Identity Analysiscontrasting
confidence: 56%
“…The identity of translated amino acid sequences ranged from 93% (isolates D6 vs. BF105) to 100% (isolates B87 vs. B25 and B34; Iv2/1 vs. P113), as the number of variable amino acids ranging from 0 to 7. The reported nucleotide and amino acid sequence identity of 24 Slovak PDV isolates from cherry ranges from 85.8 to 99.1% and from 85.3 to 100%, respectively [13]. Similarly, another study reported 84%-99% and 81%-100% sequence identity at the nucleotide and amino acid level, respectively, of the CP genes of PDV cherry isolates from Turkey and from other parts of the world [14].…”
Section: Phylogenetic and Sequence Identity Analysismentioning
confidence: 96%
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“…Similarly, several phylogenetic groups have been reported for PDV isolates whereby one study of isolates from Turkey has reported the existence of four distinct phylo-groups [ 19 ] while a recent study using the CP sequences of all PDV isolates published and available in GenBank indicated the presence of only two phylo-groups [ 2 ]. Earlier studies suggested a separation of PDV isolate groupings based on host but later studies could not relate phylogenetic groups to host or geographic origin [ 19 , 20 , 21 ].…”
Section: Introductionmentioning
confidence: 99%