“…A neighbor-joining (NJ) tree was constructed using a Poisson model with 1,000 bootstrap replicates. The protein sequences included CCD1, CCD4a, NCED1, NCED2, ALDH12, ALDH14, UGT60, UGT67, UGT86, and UGT89 from this study; AtCCD1, AtCCD4, AtNCED3, AtNCED5, AtNCED6, AtCCD7, AtCCD8, AtALDH2C4, AtALDH2B7 UGT73C6, and UGT73B2 from A. thaliana (Skibbe et al, 2002; Jones et al, 2003; Nair et al, 2004; Auldridge et al, 2006; Kim et al, 2006; Alder et al, 2012; Frey et al, 2012; Gonzalez-Jorge et al, 2013); CsCCD2, CsGT45, and UGTCs2 from C. sativus (Moraga et al, 2004; Frusciante et al, 2014); MtCCD1 and UGT73K1 from Medicago truncatula (Achnine et al, 2005; Floss et al, 2008; Moraga et al, 2009); CmCCD1 from Cucumis melo (Ibdah et al, 2006); CmCCD4a from C. morifolium (Ohmiya et al, 2006); CitCCD4 from C. unshiu (Ma et al, 2013; Rodrigo et al, 2013); CaALDH1 from C. annuum (Kim and Hwang, 2015); AaALDH1 from A. annua (Teoh et al, 2009); BoBADH from B. orellana (Bouvier et al, 2003); REF1 from B. napus (Mittasch et al, 2013); Zmrf2 (ALDH2B2) from Z. mays (Cui et al, 1996); BALDH from A. majus (Long et al, 2009); UGT75L6 and UGT94E5 from G. jasminoides (Nagatoshi et al, 2012); VLOGT1, VLOGT2, and VLOGT3 from Vitis labrusca (Hall et al, 2011); Gt5GT7 from Gentiana triflora (Nakatsuka et al, 2008); UGT1, UGTPg29, and UGTPg45 from P. ginseng (Yan et al, 2014; Wang et al, 2015); CrUGT8 from Catharanthus roseus (Asada et al, 2013); AdGT4 from Actinidia deliciosa (Yauk et al, 2014); GAME2 from Solanum lycopersicum (Itkin et al, 2013); ZOG1 from Phaseolus lunatus (Martin et al, 1999b); and ZOX1 from Phaseolus vulgaris (Martin et al, 1999a). Conserved motifs in CCDs, ALDHs and UGTs were detected using motif based sequence analysis tool MEME (Suite version 4.11.2).…”