2008
DOI: 10.1021/ct700192z
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Molecular Graphics of Convex Body Fluids

Abstract: Coarse-grained modeling of molecular fluids is often based on nonspherical convex rigid bodies like ellipsoids or spherocylinders representing rodlike or platelike molecules or groups of atoms, with site-site interaction potentials depending both on the distance among the particles and the relative orientation. In this category of potentials, the Gay-Berne family has been studied most extensively. However, conventional molecular graphics programs are not designed to visualize such objects. Usually the basic un… Show more

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Cited by 60 publications
(46 citation statements)
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“…the w vectors on a given plane perpendicular to n preferentially point to the same direction. Additional insights on the onset of the N * S phase are provided by the correlation functions g (R ) and g A glance at two snapshots [43] also reported in Fig. 7 gives a visual support of this interpretation.…”
Section: A Phase Diagrams From Mc-nptsupporting
confidence: 59%
See 1 more Smart Citation
“…the w vectors on a given plane perpendicular to n preferentially point to the same direction. Additional insights on the onset of the N * S phase are provided by the correlation functions g (R ) and g A glance at two snapshots [43] also reported in Fig. 7 gives a visual support of this interpretation.…”
Section: A Phase Diagrams From Mc-nptsupporting
confidence: 59%
“…8, bottom left) does not provide indication of translational order within each single layer, and ψ 6 is found to be very small. This screw-smectic phase, globally uniaxial with the main director perpendicular to the layers, is • ] because of the limitations in the QMGA software [43]. For this reason, this color coding will not be further exploited in the remaining of the paper.…”
Section: A Phase Diagrams From Mc-nptmentioning
confidence: 99%
“…Image was created with the program QMGA. 69 is also exhibited by the fcc-like crystal but only for κ 0.873. For smaller value of κ, its value of φ increases and gets closer and closer to that for the bco-like crystal.…”
Section: Dense Packing Constructionsmentioning
confidence: 97%
“…Images were created using the program QMGA. 69 versus φ [ Fig. 7(b)] curves, provided that p is sufficiently low so that the complete transformation of a elo-like configuration into a bco-like crystal is facilitated.…”
Section: A Equilibrium Phase Behaviormentioning
confidence: 99%
“…Their equation of state was calculated and the phases formed identified mostly by direct visualization using the program QMGA. 45 Full quantitative analysis of their features along the lines presented in the previous work 11 is deferred to a subsequent paper. Specifically, the values of R* investigated were: 1/ √ 2π , 0.45, 0.55, 0.7, 1, 1.5, 1.6, 2, 5, 10, 100.…”
mentioning
confidence: 99%