Anaplasma spp. are significant arthropod-borne bacteria globally, but documented information about anaplasmosis in small ruminants in the north of Iraq is insufficient. Hence, this study was conducted to determine the prevalence of Anaplasma spp. and identify sheep and goat tick vector populations in Sulaymaniyah Governorate, north Iraq. The study population consisted of 470 sheep and 145 goats from 45 livestock farms in 10 geographical locations of Sulaymaniyah Governorate. The study was accomplished from April to December 2017. Blood samples were taken from the jugular vein and used for DNA extraction. Polymerase chain reaction (PCR) was conducted using primers based on the 16S rRNA of Anaplasma spp. Fragments of PCR products were sequenced for phylogenetic analysis. The prevalence of Anaplasma spp. was 58.9% based on the PCR results. Furthermore, 58.9% of sheep and 57.9% of goats were positive for anaplasmosis. The sequences represented 100% identity with previously documented GenBank isolates of A. ovis from Iran, the Netherlands, China, and Mongolia. Altogether, 150 Ixodid ticks were picked from small ruminants within the same flocks and were identified based on morphological features. Various infestation rates were observed; about 40% of the Ixodid ticks belonged to Rhipicephalus sanguineus, 34% belonged to Rhipicephalus turanicus, 18% were Hyalomma anatolicum, and 8% were Boophilus microplus (Rhipicephalus microplus). The present report is the first molecular study of Anaplasma species in small ruminants from Sulaymaniyah Governorate in northern Iraq to the best of our knowledge. The study concluded that anaplasmosis was endemic in small ruminants from the investigated areas.