Molecular taxonomy and phylogenetics of Daedaleopsis confragosa (Bolt.: Fr.) J. Schröt. From wild cherry in Serbia

Vladislava, Galović; Markovic, M.; Predrag, Pap; Martin, M. Kay; Rakić, Milana; Aleksandar, Vasiljević; Pekeč, Saša

doi:10.2298/gensr1802519g

Cited by 4 publications

(2 citation statements)

References 9 publications

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“…Traditionally, morphological characteristics have been used by expert taxonomists, systematic biologists and trained practitioners to identify species after earning substantial experience in the field (EFTEKHARIAN et al, 2018); KRESS and ERICKSON, 2008). As the significance of biodiversity is increasing day by day in the field of agriculture, evolutionary biology, ecology, conservation biology and other fields, therefore correct identification of plant taxa is very necessary, while DNA barcode is an important tool for the modern-day plant identification and delimitation (BAYAT et al, 2018;GALOVIĆ et al, 2018;WANG et al, 2018). Recent advances in the field of genomics and bioinformatics are incomplete without the use of DNA sequences (SEVĠNDĠK and YALÇIN, 2018;SAVIĆ et al, 2019).…”

Section: Introductionmentioning

confidence: 99%

Phylogeny and diversity of lamiaceae based on rps14 gene in Pakistan

Ayaz¹,

Zaman²,

Saqib³

et al. 2020

Genetika

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The present research work was carried out to conduct concordance between the molecular data and the phylogenetic relationship between the selected species of Lamiaceae. We studied 34 species collected from various phytogeographical areas of Pakistan. Molecular DNA was isolated from fresh leaf specimens of the selected taxa. The rps14 gene was amplified for the isolation of DNA sequencing and the amplified products were sequenced and analyzed for phylogenetic analysis. The sequenced products were analyzed using bioinformatics tools such as MEGA7, I-TASSER (Iterative Threading Assembly Refinement) and SAVES (The Structure Analysis and Verification Server). ExPASY translate tool was used for the translation of nucleotide sequences to amino acid sequences. Phlomis cashmeriana with Origanum vulgare, and Lamium album with Lamium amplexicaul showed a close relationship in both phylogenetic trees with well-represented bootstrap (BS) values. The pairwise distance ranged from 0.013 to 0.19 with an overall mean distance of 0.068 was also observed. I-TASSER software was utilized to predict the 3D protein structures followed by stereochemical analysis. Based on the present finding it is determined that the rps14 gene would be used as a DNA barcode for the identification of plant taxa. Additionally, it is needed for the development of additional reliable molecular markers to resolve the systematics issues in the family Lamiaceae.

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Section: Introductionmentioning

confidence: 99%

Phylogeny and diversity of lamiaceae based on rps14 gene in Pakistan

Ayaz¹,

Zaman²,

Saqib³

et al. 2020

Genetika

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show abstract

“…Our study suggests that pollen features, that is, the size and shape of the reticula, colpus ornamentation exhibit a continuous range of variation within the genera and could be a useful tool to differentiate Lamioideae taxa (Xiang, Funamoto, Evangelista, Zhang, & Peng, 2013). Moreover, Lamioideae taxa should be further screened out for its foliar epidermal studies through following the previous methods (Vastag et al, 2019), phytochemical (Ivanišević et al, 2019) and molecular studies (Galović et al, 2018; Sheidai, Koohdar, & Poode, 2018). Our present finding showed that the pollen morphology of the study taxa showed some overlap taxonomic characters and some important characters to differentiate the study taxa.…”

Section: Resultsmentioning

confidence: 99%

Palynological characteristics of selected Lamioideae taxa and its taxonomic significance

Gul

Ahmad

Zafar

et al. 2020

Microscopy Res & Technique

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Lamioideae comprised the second‐largest subfamily in Lamiaceae. Although considerable progress has recently been made in the taxonomic study of Lamioideae, the subfamily remains one of the most poorly investigated subfamily in Lamiaceae. Therefore, the present study was designed with the aim to document the pollen micromorphology of some selected Lamioideae taxa and its taxonomic significance from Pakistan. Pollen micromorphological features were observed using scanning electron microscopy. The pollen grains are monad, tricolpate, radially/bilateral symmetrical. The pollen grains were small to medium‐sized having oblate, oblate/subspheroidal, and subspheroidal shape. Exine sculpturing was observed as reticulate, microreticulate, and bireticulate. The colpus surface ornamentation was found as verrucate, gemmate, scabrate, and psilate. There was a considerable variation between the species in the micromorphology, that is, the coarseness of the reticulum, thickness of the muri comprising the reticulum and the number of secondary lumina per primary lumen. Hence, this study documented the pollen morphology of some selected taxa of the subfamily Lamioideae from Pakistan and strengthens the taxonomic identification of subfamily based on pollen characters, which helps in the correct identification, discrimination of the species of Lamioideae at generic and species level.

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A contribution to the knowledge of fungi Daedaleopsis confragosa (Bolton) Schröt the cause of white rot of hardwood

Karadzic,

Radulovic,

Jovanovic

et al. 2023

Glas Suma Fakul

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Within the Daedaleopsis genus six species has been described, however, some sources are indicating that there are 10(11) species. Two species are occurring in Europe, including D. confragosa (with its variety tricolor) and D. septentrionalis. Daedaleopsis confragosa causes white rot of broadleaved hosts and most often appears as saprotroph, less often at living trees as opportunistic parasite. Basidiomes of D. confragosa form two types of hymenophore and express differences in the color of upper surface. Based on this, two species were separated in the past including D. confragosa with pores and D. tricolor with lamelloid hymenophore. The aims of this study were to isolate the fungus from morphologically different fruiting bodies and to determine whether there is any difference in growth rates and morphology of pure cultures. It was recorded that reaction and growth on media amended with gallic or tannic acid are identical, and there were no substantial differences in growth rates at different temperatures. Both types of fruiting bodies at short distances were recorded on the same branches in some cases, and after the isolation tests morphologically identical cultures were obtained. Based upon these results and previously performed molecular studies, we believe that there is no reason for D. tricolor to be considered even as a variety, and that is a single species D. confragosa. Fungus D. confragosa has medicinal properties showing cytotoxic, analgesic, anticancer, antifungal, antibacterial and antiviral effects.

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Molecular taxonomy and phylogenetics of Daedaleopsis confragosa (Bolt.: Fr.) J. Schröt. From wild cherry in Serbia

Cited by 4 publications

References 9 publications

Phylogeny and diversity of lamiaceae based on rps14 gene in Pakistan

Phylogeny and diversity of lamiaceae based on rps14 gene in Pakistan

Palynological characteristics of selected Lamioideae taxa and its taxonomic significance

A contribution to the knowledge of fungi Daedaleopsis confragosa (Bolton) Schröt the cause of white rot of hardwood

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