In this study, a chloramphenicol and aflatoxin M1 aptamer-functionalized
DNA hydrogel was designed for the simultaneous detection of chloramphenicol
and aflatoxin M1 for the first time. The acrydite-modified chloramphenicol
aptamer sequence was used to synthesize the DNA hydrogel and for visual
detection of chloramphenicol depending on the gel-to-sol transition
of the target-responsive DNA hydrogel. The DNA hydrogel formulation
was set as follows: 60% of each linear polyacrylamide–DNA conjugate
and 40% of acrylamide and chloramphenicol aptamer/DNA strand-1 at
a molar ratio of 1:1, and the lowest concentration of chloramphenicol
leading to gel dissociation was 1.0 nM at 25 °C. Furthermore,
the formalized aptamer-functionalized DNA hydrogel was used to detect
aflatoxin M1 by measuring the recovery of the fluorescence signal
that was quenched when the FAM-labeled aflatoxin M1 aptamer and BHQ1-labeled
DNA strand-2 were hybridized to form a double-stranded DNA in the
network of hydrogel. The detection platform was successfully applied
to the detection of chloramphenicol and aflatoxin M1, both in aqueous
solution and in milk. The aptamer-functionalized DNA hydrogel had
detection (LOD) and quantification limits (LOQ) for aflatoxin M1 as
1.7 and 5.2 nM, respectively. Using two aptamer sequences with high
affinity and specificity, the dual-sensing platform based on the DNA
hydrogel achieved higher selectivity for chloramphenicol and aflatoxin
M1, which demonstrated its potential as a reliable simultaneous detection
platform against two different targets for monitoring food safety.