The oriental fruit fly, Bactrocera dorsalis is one of the most destructive pests of horticultural crops in tropical and subtropical Asia. The insect relies heavily on its olfactory system to select suitable hosts for development and reproduction. To understand the neural basis of its odor-driven behaviors, it is fundamental to characterize the anatomy of its olfactory system. In this study, we investigated the anatomical organization of the antennal lobe (AL), the primary olfactory center, in B. dorsalis, and constructed a 3D glomerular atlas of the AL based on synaptic antibody staining combined with computerized 3D reconstruction. To facilitate identification of individual glomeruli, we also applied mass staining of olfactory sensory neurons (OSNs) and projection neurons (PNs). In total, 64 or 65 glomeruli are identifiable in both sexes based on their shape, size, and relative spatial relationship. The overall glomerular volume of two sexes is not statistically different. However, eight glomeruli are sexually dimorphic: four (named AM2, C1, L2, and L3) are larger in males, and four are larger in females (A3, AD1, DM3, and M1). The results from anterograde staining, obtained by applying dye in the antennal lobe, show that three typical medial, media lateral, and lateral antennal-lobe tracts form parallel connections between the antennal lobe and protocerebrum. In addition to these three tracts, we also found a transverse antennal-lobe tract. Based on the retrograde staining of the calyx in the mushroom body, we also characterize the arrangement of roots and cell body clusters linked to the medial antennal-lobe tracts. These data provide a foundation for future studies on the olfactory processing of host odors in B. dorsalis.