Over 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins. The function of these H/ACA RNPs is essential for ribosome biogenesis, pre-mRNA splicing, telomere maintenance, and, likely, for additional cellular processes. Recent crystal structures of archaeal H/ACA protein complexes illustrate how the same four proteins accommodate more than 100 distinct though related H/ACA RNAs and reveal a spatial mutation cluster underlying the bone marrow failure syndrome dyskeratosis congenita (DC).Keywords H/ACA RNPs; H/ACA RNAs; crystal structure; core proteins; dyskeratosis congenita; RNAprotein interaction The vast majority of mammalian H/ACA RNPs engage in isomerization of uridines to pseudouridines (pseudouridylation) in ribosomal and spliceosomal small nuclear RNAs. Although the function of most pseudouridines is unknown, some are essential for optimal translation and for pre-mRNA splicing [1]. Perhaps the most intriguing species of H/ACA RNPs are defined by the snoRNA U17/E1 (snR30 in yeast), telomerase RNA (which ends in an H/ACA RNA structure), and a growing number of orphan H/ACA RNAs (without complementarity to any stable RNAs) [2]. U17 is the only essential H/ACA RNA and is required for pre-ribosomal RNA processing; telomerase RNA is required for the replication of chromosome ends; and the orphan H/ACA RNAs are by definition of unknown function but potentially involved in similar important processes as U17 and telomerase RNA (Fig. 1) [3]. Recently, three groups solved the crystal structures of archaeal H/ACA RNP core complexes consisting of two or three core proteins (Fig. 1) [4][5][6]. For the first time, these structures provide molecular details of protein-protein interactions in the H/ACA core complex and of the pseudouridylase itself. meier@aecom.yu Fig. 1), the other class being C/D RNAs. On average 130-140 nucleotides in length, H/ACA RNAs conform to a consensus 5'-hairpin-hinge-hairpin-tail-3' secondary structure with the characteristic ACA trinucleotide exactly three residues from the 3' end ( Fig. 1). H/ACA RNAs identify the ~130 known mammalian pseudouridylation sites by base pairing to a few nucleotides flanking the target uridines. Complementarity to target RNAs lies in the upper half of a bulge (pseudouridylation pocket) of one or both of the hairpins placing the unpaired target uridine at the bottom of a helix [7,8]. Pseudouridylation is catalyzed by one of the four H/ACA core proteins, the pseudouridylase NAP57 (also dyskerin or, in yeast and archaea, Cbf5) [9]. The small basic proteins GAR1, NOP10, and NHP2 (L7Ae in archaea) round out H/ACA RNPs. All four core proteins, except GAR1, are essential for the structural integrity of H/ACA RNPs [3].
The structuresThe structure of the archaeal pseudouridylase Cbf5 was solved complexed with Nop10 [5,6] or with Nop10 and Gar1 [4]. Based on structural and sequence homologies, pseudouridylases are classified into 5 families, RluA, RsuA, TruA, TruB, and TruD [10].Crystal structur...