Multi-tissue Siberian sturgeon RNA sequencing data

Klopp, Christophe; Cabau, Cédric; Lasalle, André; Landro, Santiago Di; Greif, Gonzalo; Vizziano-Cantonnet, Denise

doi:10.1016/j.dib.2020.105820

Cited by 2 publications

(1 citation statement)

References 5 publications

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“…Ethics statement, experimental procedures, rearing procedures, RNA extraction, cDNA library construction and Illumina sequencing have been described in ( 37 ). The raw read data files have been published in SRA in the PRJNA589 958 BioProject and have the following identifiers: SRX7 158 196 to SRX7 158 205.…”

Section: Methodsmentioning

confidence: 99%

Siberian sturgeon multi-tissue reference transcriptome database

et al. 2020

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Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. Availability: The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information: Supplementary data are available at Database online.

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Section: Methodsmentioning

confidence: 99%