The polymerase chain reaction (PCR) has been widely used
in medical
diagnosis and forensic identification due to its ultrahigh sensitivity
and signal amplification. Metal ions (i.e., Cu
2+
, Zn
2+
) have been considered PCR inhibitors and rarely shown their
positive roles in PCR amplification until our report, in which we
discovered that metal ions can significantly improve the PCR specificity
and the yield of target DNA sequences. For an in-depth investigation
with taking copper ions as a typical model, here we found an interesting
spatiotemporal regulation mechanism of metal ions in PCR. The ionic
concentration window for improving PCR specificity not only was independent
of annealing temperature but also can be well regulated by both the
annealing time and extension time. Using the ionic concentration window
as a measure, the time affects either the amount or the sequence length
of nonspecific amplicons in the space. The mechanism proposed in this
work will deepen our understanding of the unneglectable roles of metal
ions in DNA replication and meanwhile provide a new strategy for designing
regulation kits for PCR-based biomedical applications.