Background: Bronchiolar adenoma (BA) is a rare benign tumor arising from the bronchiolar mucosal epithelium that mainly occurs in the periphery of lung. The most prominen histopathologic feature of BA is a bilayered bronchiolar-type epithelium containing a continuous basal cell layer. However, due to the high mutation frequency of driven genes, it is still controversial whether BA has malignant transformation potential. In frozen sections, basal cells are difficult to identify by microscopically, making it difficult to distinguish from non-mucinous adenocarcinoma, especially when malignant transformation of BA into invasive mucinous adenocarcinoma (IMA) occurs, it is only differentiated by histomorphology criteria, which greatly improves the difficulty of diagnosis. Case presentation: This paper, we report a case of a 59-year-old man. The chest computed tomography (CT) showed a high-density nodular gradually increased during 4 years in the outer basal segment of the right lower lobe, followed by thoracoscopic wedge resection of the right lower lobe. Postoperative pathological diagnosis was BA, with mucous gland structure formation combined with basal cell loss in partial region, considering malignant transformation into invasive mucinous adenocarcinoma. Regular postoperative follow-up showed no recurrence or metastasis. Hybridization Capture-based next-generation sequencing (NGS) eventually detected driver gene KRAS and CDK6 mutations in the case, and the results suggested the occurrence of malignant transformation from BA to IMA.Conclusion: In the nodular, the loss of continuity of the basal cell layer in the area of mucous glandular structures and the driver gene KRAS mutation indicate a malignant transformation of BA into IMA in this case, so we infer that BA has malignant potential.