Abstract. In recent years, droughts have frequently hit China's terrestrial ecosystems. How these droughts affected carbon sequestration by China's terrestrial ecosystems is still unclear. In this study, the process-based Boreal Ecosystem Productivity Simulator (BEPS) model, driven by remotely sensed vegetation parameters, was employed to assess the effects of droughts on net ecosystem productivity (NEP) of terrestrial ecosystems in China for the period from 2000 to 2011. Different categories of droughts, as indicated by a standard precipitation index (SPI), extensively hit terrestrial ecosystems in China, particularly in 2001, 2006, 2009 and 2011. The national total NEP exhibited a slight decline of −11.3 Tg C yr−2 during the study period, mainly due to large reductions of NEP in typical drought-hit years 2001, 2006, 2009 and 2011, ranging from 61.1 Tg C yr−1 to 168.8 Tg C yr−1. National and regional total NEP anomalies were correlated with corresponding annual mean SPI, especially in Northwest China, North China, Central China, and Southwest China. In drought years, the reductions of NEP might be caused by a larger decrease in gross primary productivity (GPP) than in respiration (RE) (2001 and 2011), a decrease in GPP and an increase in RE (2009), or a larger increase in RE than in GPP (2006). Droughts had lagged effects of up to 3–6 months on NEP due to different reactions of GPP and RE to droughts. In east humid and warm parts of China, droughts have predominant and short-term lagged influences on NEP. In western cold and arid regions, the effects of droughts on NEP were relatively weaker and might last for a longer period of time.