Natural killer (NK) cells express activating and inhibitory receptors that, in concert, survey cells for proper expression of cell surface major histocompatibility complex (MHC) class I molecules. The mouse cytomegalovirus encodes an MHC-like protein, m157, which is the only known viral antigen to date capable of engaging both activating (Ly49H) and inhibitory (Ly49I) NK cell receptors. We have determined the 3D structure of m157 and studied its biochemical and cellular interactions with the Ly49H and Ly49I receptors. m157 has a characteristic MHC-fold, yet possesses several unique structural features not found in other MHC class I-like molecules. m157 does not bind peptides or other small ligands, nor does it associate with 2-microglobulin. Instead, m157 engages in extensive intraand intermolecular interactions within and between its domains to generate a compact minimal MHC-like molecule. m157's binding affinity for Ly49I (K d Ϸ 0.2 M) is significantly higher than that of classical inhibitory Ly49 -MHC interactions. Analysis of viral escape mutations on m157 that render it resistant to NK killing reveals that it is likely to be recognized by Ly49H in a binding mode that differs from Ly49/MHC-I. In addition, Ly49H؉ NK cells can efficiently lyse RMA cells expressing m157, despite the presence of native MHC class I. Collectively, our results show that m157 represents a structurally divergent form of MHC class I-like proteins that directly engage Ly49 receptors with appreciable affinity in a noncanonical fashion.immune system ͉ molecular recognition M ouse strains differ in their susceptibility to infection by mouse cytomegalovirus (MCMV), and protection is mediated by natural killer (NK) cells (1). NK cell-mediated resistance to MCMV infection was mapped to a genetic locus on mouse chromosome 6 in a region named the ''natural killer gene complex'' (1). This region encodes both inhibitory and activating lectin-like Ly49 receptors that, in concert, regulate NK cell activity through recognition of major histocompatibility complex (MHC) class I ligands. In C57BL/6 mice, the receptor encoded by the Ly49H gene (Ly49H) is responsible for controlling MCMV replication in visceral organs (2-4). BALB/c mice do not possess a Ly49H gene, and consequently they restrict MCMV replication; however, transgenic expression of a genomic Ly49H gene in these mice confers resistance to MCMV replication (5). Subsequent studies demonstrated that Ly49H specifically recognizes the m157 glycoprotein encoded by MCMV (6, 7). m157 is expressed on the surface of MCMV-infected cells and anchored through a phosphatidylinositol glycan linker (6,8). In addition to Ly49H, m157 also binds to at least one inhibitory receptor, Ly49I 129/J , expressed in the MCMV-susceptible mouse strain 129/J (6). Structural prediction indicated that m157 is structurally similar to that of an MHC class I molecule (6, 7), despite lacking appreciable sequence similarity.Class I MHC proteins are membrane-bound heterodimeric proteins consisting of a polymorphic heavy chain...