The somatic activation of PI3K/AKT pathway mutations, PIK3CA and AKT1, and ESR1 mutations in plasma cell-free DNA (cfDNA) has been studied as a non-invasive procedure to quickly assess and monitor disease progression or therapeutic effect in breast cancer (BC) patients, but the clinical significance of these mutations in late treatment lines (TLs) remains unclear. The subjects of this study were a total of 251 plasma samples from 128 estrogen receptor-positive (ER+) BC patients. Of these plasma samples, 133 were from 73 primary BC (PBC) patients, and 118 plasma samples were from 68 metastatic BC (MBC) patients. We developed droplet digital PCR (ddPCR) assays to verify the clinical significance of PIK3CA, AKT1, and ESR1 mutations in these patients. cfDNA PIK3CA mutations were observed in 15.1% of the PBC patients, while a cfDNA AKT1 mutation was observed in 1.4% of patients, and cfDNA ESR1 mutations were observed in 2.7% of patients. Patients with detectable cfDNA PIK3CA mutations were not associated with clinical outcomes. According to the TL, the prevalence of the PIK3CA and ESR1 mutations in cfDNA were lower in early TLs compared with late TLs. In the early TL group, patients with cfDNA PIK3CA mutations had a shorter time to treatment failure (TTF) than patients without mutations (P = 0.035). However, there was no statistically significant difference between patients with or without cfDNA ESR1 mutations. However, in the late TL group, patients with cfDNA ESR1 mutations had a shorter TTF than patients without mutations (P = 0.048). However, there was no statistically significant difference between patients with or without cfDNA PIK3CA mutations. Since the prevalence of cfDNA AKT1 mutation is low in both PBC and MBC patients, the impact of AKT1 mutations on the prognosis remains unclear. We have demonstrated the difference in the clinical significance of the hotspot PIK3CA, AKT1, and ESR1 mutations in cfDNA for each TL in ER+ BC patients.Keywords: Estrogen receptor-positive breast cancer, Cell-free DNA, PIK3CA mutations, AKT1 mutation, ESR1 mutations Endocrine therapy (ET) resistance occasionally occurs during the treatment of primary breast cancer (PBC) and inevitably results in metastatic BC (MBC). Recently, the focused mechanisms of ET resistance include hyperactivation of PI3K/AKT pathway. Importantly, somatic activating mutations of PIK3CA and AKT1 affect the magnitude of PI3K/AKT activation [1]. Meta-analysis of the BC literature shows that the PIK3CA mutation is present in 20%-40% of all BCs, making this gene the second most frequently mutated in BC, with most mutations being expressed in 'hotspots' in the helical domain (exon (Ex) 9) or the catalytic domain (Ex20) [2]. A somatic mutation in the plekstrin homology domain of AKT1:p.Glu17Lys is found in approximately 4% of breast tumors [3]. Conversely, recent evidence describing next generation sequencing showed that another key potential mechanism of the failure of ET involves activating