Three genes involved in gluconate metabolism, gntR, gntK, and gntU, which code for a regulatory protein, a gluconate kinase, and a gluconate transporter, respectively, were cloned from Escherichia coli K-12 on the basis of their known locations on the genomic restriction map. The gene order is gntU, gntK, and gntR, which are immediately adjacent to asd at 77.0 min, and all three genes are transcribed in the counterclockwise direction. The gntR product is 331 amino acids long, with a helix-turn-helix motif typical of a regulatory protein. The gntK gene encodes a 175-amino-acid polypeptide that has an ATP-binding motif similar to those found in other sugar kinases. While GntK does not show significant sequence similarity to any known sugar kinases, it is 45% identical to a second putative gluconate kinase from E. coli, gntV. The 445-amino-acid sequence encoded by gntU has a secondary structure typical of membrane-spanning transport proteins and is 37% identical to the gntP product from Bacillus subtilis. Kinetic analysis of GntU indicates an apparent K m for gluconate of 212 M, indicating that this is a low-affinity transporter. Studies demonstrate that the gntR gene is monocistronic, while the gntU and gntK genes, which are separated by only 3 bp, form an operon. Expression of gntR is essentially constitutive, while expression of gntKU is induced by gluconate and is subject to fourfold glucose catabolite repression. These results confirm that gntK and gntU, together with another gluconate transport gene, gntT, constitute the GntI system for gluconate utilization, under control of the gntR gene product, which is also responsible for induction of the edd and eda genes of the Entner-Doudoroff pathway.Escherichia coli is found in the large intestines of vertebrates, usually as a minority member of the normal flora, and is capable of utilizing a wide range of carbohydrates (40). Sugars are normally catabolized via the Embden-MeyerhofParnas glycolytic pathway and the pentose phosphate pathway, which are the two central and constitutive routes of intermediary carbohydrate metabolism in E. coli (17). A third central route, the Entner-Doudoroff pathway, was discovered in 1952 in Pseudomonas saccharophila (12) and was later shown to be present in E. coli (13,45).The Entner-Doudoroff pathway, as it operates in E. coli, is specifically induced by gluconate and allows its entry into central glycolytic metabolism (for a review, see reference 6). Early genetic studies of gluconate metabolism revealed some of the genetic loci involved in gluconate transport and gluconate phosphorylation, as well as the key enzymes of the EntnerDoudoroff pathway (1, 9, 14, 24, 32, 46). There are two systems for gluconate transport and phosphorylation in E. coli (1, 24). GntI, the main system, contains gntT, gntU, and gntK, which code for high-and low-affinity gluconate transporters and a thermoresistant gluconokinase, respectively. The genes gntT, gntU, and gntK are located in the bioH-asd region of the chromosome, at 77.0 min on the E. coli geno...