Aggregation-promoting factor (APF) was originally described as a protein involved in the conjugation and autoaggregation of Lactobacillus gasseri 4B2, whose corresponding apf gene was cloned and sequenced. In this report, we identified and sequenced an additional apf gene located in the region upstream of the previously published one. Inactivation of both apf genes was unsuccessful, indicating that APF function may be essential for the cell. Overproduction of APF proteins caused drastic alteration in the cell shape of this strain. These cells were irregular, twisted, enlarged, and tightly bound in unbreakable clumps of chains. Down-regulation of APF synthesis was achieved by cloning of the apf2 promoter region on a high-copy-number plasmid, which recruited a putative apf activator. As a consequence, the shape of the corresponding recombinant cells was elongated (filamentous) and cell division sites were no longer visible. None of the induced changes in APF production levels was clearly correlated with modifications of the aggregation phenotype. This report shows, for the first time, that APF proteins are mainly critical for L. gasseri 4B2 cell shape maintenance.Lactic acid bacteria are normal inhabitants of the human oral cavity and gastrointestinal (GI) and urogenital tracts. Interest in the health-promoting effects of specific lactic acid bacterial strains has increased in recent years (10, 12). Survival and persistence of probiotic bacteria in the human GI tract is often reported to provide them a competitive advantage. One of the proposed mechanisms that could increase the potential of bacteria to survive and persist in the GI tract is their ability to aggregate (13). However, this hypothesis has never been confirmed.To study the importance of aggregation, we chose an aggregating strain, Lactobacillus gasseri 4B2 (previously classified as L. plantarum 4B2), whose 32-kDa aggregation-promoting factor (APF) has already been described (25). This protein was purified from the culture supernatant as one of the most abundant proteins. The function of APF as a factor of aggregation was shown in vitro. After three subsequent washing steps, L. gasseri 4B2 lost its ability to aggregate. Addition of purified APF or of filtered supernatant reaggregated the washed cells. Furthermore, the role of APF in conjugation was also demonstrated (25). The frequency of pAM1 conjugal transfer (among Lactobacillus species whose aggregation is APF dependent) was increased upon addition of L. gasseri 4B2 filtered supernatant to the mating mixture. Since neither the apf gene nor any apf mutant was available, the exact physiological role of APF could not be demonstrated. Subsequent N-terminal sequencing of the L. gasseri 4B2 APF protein enabled the cloning and sequencing of the apf gene (accession no. Y08498; L. Morelli et al., direct submission).Recently, we showed that four L. johnsonii and two L. gasseri strains contain two apf genes in their genomes (34). Analysis of the gene organization, amino acid composition, and physical propert...