Among the myogenic regulatory factors, myogenin is a transcriptional activator situated at a crucial position for terminal differentiation in muscle development. It is unclear at present whether myogenin exhibits unique specificities to transactivate late muscular markers. During Xenopus development, the accumulation of myogenin mRNA is restricted to secondary myogenesis, at the onset of the appearance of adult isoforms of -tropomyosin and myosin heavy chain. To determine the role of myogenin in the isoform switch of these contractile proteins, we characterized and directly compared the functional properties of myogenin with other myogenic regulatory factors in Xenopus embryos. Two distinct cDNAs related to myogenin, XmyogU1 and XmyogU2, were differentially expressed during myogenesis and in adult tissues, in which they preferentially accumulated in oxidative myofibers. Animal cap assays in Xenopus embryos revealed that myogenin, but not the other myogenic regulatory factors, induced expression of embryonic/larval isoforms of the -tropomyosin and myosin heavy chain genes. Only XmyogU1 induced expression of the adult fast isoform of the myosin heavy chain gene. This is the first demonstration of a specific transactivation of one set of muscle structural genes by myogenin.The members of the MyoD gene family, including myoD (1), myogenin (2), myf5 (3), and MRF4 (4, 5), encode myogenic transcription factors (MRFs) 1 able to convert non-muscle cells to a muscle phenotype in culture (6, 7). First identified in mammals, all four proteins share a highly conserved central region related to the basic helix-loop-helix domain of the c-Myc superfamily. The MRFs are specifically expressed in skeletal muscle, with non-identical patterns of expression (8), and form a regulatory network controlling muscle determination and/or differentiation. Experiments using various MRF knockout mice have progressively elucidated the hierarchical relationships among the MRFs and established that functional redundancy is a feature of the MRF regulatory network. Thus, MyoD and Myf5 play overlapping roles in myoblast specification, whereas myogenin and either MyoD or MRF4 are required for differentiation (9). However, the redundant functions of MyoD and MRF4 appear not to overlap with those of myogenin (10). Knockout mice lacking the myogenin gene die at birth due to severe muscle deficiency, despite normal levels of MyoD and Myf5 (11,12). Recent studies have shown that the role of myogenin in muscle formation is distinct from that of MyoD and that this difference is due to functional specialization, and not just regulation of expression (13,14).Surprisingly little is known about the identity of muscle genes that are selectively activated by myogenin and that cannot be activated by the other myogenic regulators. Indeed, all the MRFs can transactivate muscle-specific gene expression by interacting with the consensus nucleotide motif, CANNTG, also called the E box, and they are all believed to bind to their target sequences as heterodimers with ...