In prion disease, the abnormal conformer of the cellular prion protein, PrP Sc , deposits in fibrillar protein aggregates in brain and other organs. Limited exposure of PrP Sc to proteolytic digestion in vitro generates a core fragment of 19 -21 kDa, named PrP27-30, which is also found in vivo. Recent evidence indicates that abnormal truncated fragments other than PrP27-30 may form in prion disease either in vivo or in vitro. We characterized a novel protease-resistant PrP fragment migrating 2-3 kDa faster than PrP27-30 in Creutzfeldt-Jakob disease (CJD) brains. The fragment has a size of about 18.5 kDa when associated with PrP27-30 type 1 (21 kDa) and of 17 kDa when associated with type 2 (19 kDa). Molecular mass and epitope mapping showed that the two fragments share the primary N-terminal sequence with PrP27-30 types 1 and 2, respectively, but lack a few amino acids at the very end of C terminus together with the glycosylphosphatidylinositol anchor. The amounts of the 18.5-or 17-kDa fragments and the previously described 13-kDa PrP Sc C-terminal fragment relatively to the PrP27-30 signal significantly differed among CJD subtypes.