“…Certain traits do factor heavily into applied research on plant breeding, which largely focuses on how long-term trends in crop domestication are due to selection for suites of "domestication traits," including yield, nutritional quality, harvest factors (such as shattering in grains) or propagation (Doebley, Brandon, & Smith, 2006;Meyer, DuVal, & Jensen, 2012). However, farmers are also known to both evaluate the impacts of management and make management decisions based on other observable and tactile traits, such as leaf colour, size and thickness, or phenology (Gibson, Byamukama, Mpembe, Kayongo, & Mwanga, 2008;Mwanga et al, 2011) that are not necessarily part of a domestication syndrome. For example, in coffee agroforestry systems in Central America, farmers commonly select shade trees through an understanding of traits such as leaf texture and size, foliage density and rooting patterns (Cerdán, Rebolledo, Soto, Rapidel, & Sinclair, 2012), while in cocoa agroforestry systems in West Africa, farmers select shade trees based on observable leaf traits that are critical for ecosystem processes including organic matter accumulation (Isaac, Dawoe, & Sieciechowicz, 2009).…”