This study reviewed some of the challenges faced by local authorities in disaster management, especially flood disasters that occurred in Malaysia. Flood disasters are the most frequent disasters in Malaysia, especially during the monsoon seasons. The hard structure developed by Malaysia’s National Security Council (MKN) under ‘Directive 20’ is used to manage disasters in the country. Although Malaysia has become more skillful in managing flood disasters, the frequent climate changes along with weakness in implementing flood risk management plans resulted in much losses and damages throughout the country. Therefore, this study explored the gaps and weaknesses in flood risk management (FRM) in Malaysia by reviewing the available literature to recommend better flood management. This study revealed four main issues which are weaknesses in terms of (i) coordination and communication, (ii) manpower and assets, (iii) public awareness, and (iv) power and authority among local authorities to implement flood management plans. The capacity of local authorities and individuals in charge of disaster management is inadequate, especially for flood risk preparedness and management. Hence, responsible individuals are also in a vulnerable situation to implement management plans or rescue operations when flood disasters occur since they are also flood victims. Thus, the National Disaster Management Agency (NADMA) which acts as the main coordinator of disaster management in Malaysia should re-examine the flood management plan to ensure that it can be implemented efficiently and effectively, especially at the local level as they are the first respondents on the scene when the disaster occurs. The combination of both structural and non-structural measures might require in many cases the management of flood disasters; however, the disaster risk preparedness and management of individuals via customized training is a must to prevent flood disasters as well as minimize their impact. The flood management plan should also incorporate natural-based approaches at the whole-river-basin level for the long-term solution and sustainable development, not only focusing to manage the localized flood problem at the specific area.