A variety of molecular genetic approaches were used to study the effect of rabies virus (RV) infection on host gene expression in mouse brain. The down-regulation of gene expression was found to be a major effect of RV infection by using subtraction hybridization. However, a combination of techniques identified approximately 39 genes activated by infection. These included genes involved in regulation of cell metabolism, protein synthesis, synaptic activity, and cell growth and differentiation. Northern blot analysis to monitor temporal activation of several of these genes following infection revealed essentially two patterns of activation: (i) an early response with up-regulation beginning within 3 days after infection and correlating with transcription of RV nuclear protein; and (ii) a late response with enhanced expression occurring at days 6 -7 after infection and associated with peak RV replication. The gene activation patterns and the known functions of their products suggest that a number of host genes may be involved in the replication and spread of RV in the brain.T he outcome of rabies virus (RV) infection is determined by the convergence of several different virus-host interactions, including those that contribute to virus replication and spread, pathogenic effects on cells, and antiviral responses. RV is particularly suitable for the study of virus-host interactions because of the small size of its genome and its high specificity for infection of neurons. Nevertheless, the mechanisms involved in the disease process are undoubtedly complex. For example, the virus, which uses the neuronal network to spread within the host, must initially replicate in neurons without causing significant functional impairment that would compromise the infection cycle (1). While there is some understanding of the roles of viral proteins in rabies pathogenesis, the contribution of host factors to RV transcription͞replication and axonal͞trans-synaptic spread remain unknown. Various technologies are now available to identify host genes that might be essential for the life cycle of RV, important in antiviral defense, or activated nonspecifically in RV infection (2-4). Because each technology is suited for the detection of different classes of genes and different levels of gene expression, we used a variety of assays, including differential display (DD), cDNA array hybridization, subtraction hybridization (SH), and restriction fragment differential display (RFDD), to assess gene expression in rabies-infected mouse brain. With these approaches, we have revealed the effects of rabies infection on select gene expression patterns in the brain. Based on known functional properties of several gene products as well as the timing of their up-regulation after infection, we discuss possible contributions of host genes to the pathogenesis of rabies.
Materials and MethodsVirus Infection of Mice. Female, 6-to 8-week-old Swiss Webster mice were purchased from Taconic Farms. Mice were maintained under pathogen-free conditions and used to 10 w...