Integrin receptors for extracellular matrix are critical for cell motility, but the signals that determine when to stop are not known. Analysis of distal tip cell (DTC) migration during gonadogenesis in Caenorhabditis elegans has revealed the importance of transcription factor vab-3/Pax6 in regulating the ␣ integrin genes, ina-1 and pat-2. Utilizing vab-3 mutants, we show that the downregulation of ina-1 is necessary for DTC migration cessation and the up-regulation of pat-2 is required for directionality. These results demonstrate concomitant, but distinct roles in migration for each integrin. Notably, transcriptional control of migration termination provides a new mechanism for regulation of morphogenesis and organ size.Supplemental material is available at http://www.genesdev.org.Received January 24, 2007; revised version accepted May 21, 2007. Integrins are heterodimeric transmembrane receptors consisting of ␣ and  subunits that link the extracellular matrix (ECM) to the actin cytoskeleton via a wide array of intracellular proteins (Hynes 2002). Through these interactions, integrins regulate cell migration, division, differentiation, and adhesion. Coordinated regulation of integrin adhesive strength over space and time determines the speed and directionality of cell migration in vitro (Palecek et al. 1997;Ridley et al. 2003), and abnormal cell migration has been linked to certain developmental defects caused by loss of integrins in vivo (Bouvard et al. 2001). However, detailed in vivo analyses of integrins in migration are complicated by embryonic lethality of integrin-null mutants and by pleiotropic, redundant, or overlapping functions among the 18 ␣ and eight  chains in mammals. Some of the experimental constraints inherent in studies on mice can be bypassed by using the nematode Caenorhabditis elegans, which has two conserved integrin receptors composed of an ina-1/␣ or pat-2/␣ subunit associated with the pat-3/ integrin subunit (Cox et al. 2004).Post-embryonic gonadogenesis in C. elegans provides an excellent model of cell migration during development. The shape of the hermaphrodite gonad is dictated by migration of two leader cells called the distal tip cells (DTCs) (Hubbard and Greenstein 2000). The DTCs begin to migrate away from the gonad primordium on the ventral ECM of the nematode in larval stage L2 (Fig. 1A). During the third larval stage, they turn and migrate to the dorsal side, followed by a second turn and migration toward the mid-body of the nematode throughout the L4 stage. Migration ends on the dorsal surface approximately opposite the vulva, resulting in two U-shaped gonad arms coincident with the onset of adulthood (Fig. 1A,B). Executing the DTC migratory program requires the coordinated action of matrix metalloproteases, the netrin signaling system, plus integrins and other signaling molecules that regulate the cytoskeleton (Hubbard and Greenstein 2000;Cram et al. 2006). Molecular regulation of gonad size and the signals that stop DTC migration are not known.The integrin heterod...