A rat tyrosine hydroxylase [TyrOHase; tyrosine 3-monooxygenase; L-tyrosine, tetrahydropteridine:oxygen oxidoreductase (3-hydroxylating); EC 1.14.16.2] cDNA probe was used for in situ hybridization studies on histological sections through the locus coeruleus, substantia nigra, and the ventral tegmental area of the rat brain. Experimental conditions were established that yielded no background and no signal when pBR322 was used as a control probe. Using the tyrosine hydroxylase probe, we ascertained the specificity of the labeling over catecholaminergic cells by denervation experiments and comparison of the hybridization pattern with that of immunoreactivity.The use of35S-labeled probe enabled the hybridization signal to be resolved at the cellular level. A single injection of reserpine into the rat led to an increase of the intensity of the autoradiographic signal over the locus coeruleus area, confirming an RNA gel blot analysis. The potential of in situ hybridization to analyze patterns of modulation of gene activity as a result of nervous activity is discussed.Catecholaminergic cells of the central nervous system are found in small nuclei, mostly in the brain stem and mesencephalon (1, 2). In spite of their paucity (probably <5 x 104 cells) these neurons send projections to nearly every region of the brain and play a crucial role in its function. Tyrosine hydroxylase [TyrOHase; tyrosine 3-monooxygenase; L-tyrosine, tetrahydropteridine:oxygen oxidoreductase (3-hydroxylating); EC 1.14.16.2], the rate-limiting enzyme in catecholamine synthesis, has been intensively investigated, and its expression has been found to be controlled by a variety of external factors, both in the developing and adult organism (3, 4). For instance, prolonged stimulation of TyrOHase activity has been observed following increased neuronal activity (5, 6). These long-term changes result from a rise in TyrOHase mRNA levels, most probably due to an increase in TyrOHase gene transcription (7,8).In the last decade, the use of TyrOHase antibodies has been instrumental in revealing the organization ofvarious adrenergic, noradrenergic, and dopaminergic cell clusters and pathways in the brain. In the near future, it can confidently be predicted that the histochemical approach will greatly benefit from the availability of cloned cDNA probes. We report here the direct visualization of gene activity and its modulation on rat brain sections at the level ofthe locus coeruleus, the ventral tegmental area, and the substantia nigra. The complementarity of this approach with immunohistochemistry to analyze brain function and plasticity is discussed.MATERIALS AND METHODS Preparation of Probes. The construction and characterization of the recombinant pTH51 clone in plasmid pBR322 have been described (9, 10). The 1758-base-pair insert containing the complete coding and 3'-untranslated sequences was purified by electroelution after agarose gel electrophoresis and labeled by nick-translation (11) with 35S-substituted adenosine and cytidine 5'-[a-thio]-tr...