The filamentous Trichodesmium and Richelia/Calothrix appear to be crucial N 2 -fixing cyanobacteria throughout the warm oligotrophic ocean, particularly in western boundary currents. The Kuroshio, the hotspot of N 2 fixation in the Pacific Ocean, intrudes into the East China Sea (ECS) and southern Yellow Sea (SYS), which may profoundly influence composition and distribution of filamentous diazotrophs. We provide high spatial resolution dataset of filamentous diazotrophs in the ECS and SYS in July and August 2013. Results showed that Trichodesmium colonies and Richelia/Calothrix were strictly restricted to warm, saline, nitrogen-limited waters of the ECS influenced by Kuroshio and were not detected in the SYS. The density of Trichodesmium in the ECS and SYS was 8.48 × 10 6 trichomes/m 2 , and colonial trichomes accounted for 40%. In addition to free filaments, Richelia/Calothrix were found to be symbiotic with diatoms Hemiaulus, Rhizosolenia/Guinardia, Chaetoceros, and Bacteriastrum with a total density at 2.13 × 10 6 heterocysts/m 2 in the ECS. The densities of filamentous diazotrophs were significantly higher in high-salinity region of the ECS (mainly controlled by Kuroshio) than in low-salinity region of the ECS and in the SYS. The densities of Trichodesmium and Richelia/Calothrix were significantly and positively correlated with temperature, salinity, and mixed-layer depth but were negatively correlated with NO 3 , turbidity, and chlorophyll-a. These results suggested that composition and distribution of filamentous diazotrophs in the ECS and SYS were largely shaped by Kuroshio and associated physicochemical properties. We hypothesize that active N 2 fixation in Kuroshio may be substantially supported by Richelia/Calothrix in addition to Trichodesmium.