Background
Serum metabolome reflects a general patient's body response to both disease state (e.g., cancer) and implemented treatment (e.g., radiotherapy, RT). Though serum-derived exosomes are an emerging type of liquid biopsy, a metabolite content of these vesicles remains under-researched yet. In this pilot study, we aimed to compare metabolite profiles of the whole serum and serum-derived exosomes in the context of differences between cancer patients and healthy controls as well as patients’ response to RT.
Methods
Serum samples were collected from 10 healthy volunteers and 10 patients with head and neck cancer, in the latter group samples were taken before and after the end of RT. Exosomes were isolated from serum by the size-exclusion chromatography. Metabolites were purified from the complete serum and exosomes using a methanol extraction and analyzed by the gas chromatography-mass spectrometry (GC-MS).
Results
An untargeted GC-MS-based approach allowed the detection of 182 and 46 metabolites in serum and exosomes, respectively (33 compounds were present in both types of specimens). The unsupervised analyses revealed that metabolite profiles of the whole serum but not serum-derived exosomes enabled the separation of all 3 groups of samples. There were 27 compounds whose serum levels were markedly different (large effect size) between control and cancer samples and 12 compounds whose serum levels were markedly different between cancer pre-RT and post-RT samples. On the other hand, only 4 metabolites present in exosomes showed markedly different levels between cancer and control samples. Noteworthy, metabolites that differentiated cancer and control samples, either serum or exosomes, were associated with energy metabolism pathways. Serum metabolites affected by RT were associated with pathways involved in the metabolism of amino acids, sugars, lipids, and nucleotides.
Conclusions
Metabolite profile of serum-derived exosomes is less complex than that of the complete serum. However, cancer-specific features of energy metabolism could be detected in both types of specimens. On the other hand, in contrast to RT-induced changes observed in serum metabolome, this pilot study did not reveal a specific radiation-related pattern of exosome metabolites.