This study was aimed to investigate the changes in the human electroencephalographic (EEG) signal caused by modulated low-level microwaves. The 450 MHz microwave exposure modulated at 40 Hz and 70 Hz frequencies was applied to a group of 15 volunteers. The field power density at the scalp was 0.16 mW/cm 2 . Ten cycles of the exposure (1 min on and 1 min off) at both modulation frequencies were applied. Analysis of the EEG signal was performed using three different methods: nonlinear method of scaling analysis for length distribution of low variability periods (LDLVP), relative changes in EEG energy (S-parameter) and beta ratio (H-parameter). The analysis revealed significant changes caused by microwave for the whole group (H-parameter method). The exposure caused increase of the EEG beta power (S-parameter method). Statistically significant changes in EEG were detected for four subjects (26.7%) at 40 Hz modulation frequency (LDLVP method).