A 3-D coronal magnetic field is reconstructed for the NOAA active region 11158 on February 14, 2011. A GPU-accelerated direct boundary integral equation (DBIE) method is implemented. This is approximately 1000 times faster than the original DBIE used on solar non-linear force-free field modeling. Using the SDO/HMI vector magnetogram as the bottom boundary condition, the reconstructed magnetic field lines are compared with the projected EUV loop structures as observed by SDO/AIA at front view and the STEREO A/B spacecraft at side views for the first time. They show very good agreement three-dimensionally so that the topology configurations of the magnetic fields can be analyzed, thus its role in the flare process of the active region can be better understood. A quantitative comparison with some stereoscopically reconstructed coronal loops shows that the present averaged misalignment angles are at the same order as the state-of-the-art results obtained with reconstructed coronal loops as prescribed conditions. It is found that the observed coronal loop structures can be grouped into a number of closed and open field structures with some central bright coronal loop features around the polarity inversion line. The reconstructed highly-shearing magnetic field lines agree very well with the low-lying sigmoidal filament along the polarity inversion line. They are in a pivot position to all other surrounding coronal structures, and a group of electric current lines co-aligned with the central bright EUV loops overlying the filament channel is also obtained. This central lower-lying magnetic field loop system must have played a key role in powering the flare. It should be noted that while a strand-like coronal feature along the polarity inversion line may be related to the filament, one cannot simply attribute all the coronal bright features along the polarity inversion line to manifestation of the filament without any stereoscopical information. The numerical procedure and the comparison against a benchmark test case are also presented to validate that the DBIE method is rigorous and effective.