We systematically study the influence of chemical patterning on the instability of thin liquid films induced by chemical heterogeneities on a flat, horizontal, and partially wetting substrate. We consider common geometric shapes like wedges, circles, and stripes and determine the time required for nucleation of a dry-spot as a function of film thickness, contact angle, pattern dimensions, and geometry. Moreover, we characterized the resulting liquid distribution and identified conditions that avoid the formation of residual droplets on the less wettable regions, which is usually undesirable in technological applications.