There is a great demand for green methods of synthesis of nanoparticles. Fungi play an important role in the synthesis of nanoparticles, of which Aspergillus spp. are known to secrete different enzymes responsible for the synthesis of nanoparticles. The process of biosynthesis of nanoparticles is simple, rapid, cost-effective, eco-friendly, and easy to synthesize at ambient temperature and pressure. Mostly, the metal nanoparticles such as silver, gold, lead and the oxides of titanium, zinc, and copper are synthesized from Aspergillus spp. These include mainly Aspergillus fumigatus, A. flavus, A. niger, A. terreus, and A. clavatus. The fabrication of different nanoparticles is extracellular. In the present chapter, we have discussed the role of different species of Aspergillus, mechanism of biogenic synthesis particularly enzymes involved in the reduction of metal ions into nanoparticles. The biogenically synthesized nanoparticles have demonstrated several biomedicals, agricultural, and engineering applications. The biogenic nanoparticles are mostly used as antimicrobial and cytotoxic agents. Their use as fungicidal agents is important for sustainable agriculture.