Escherichia coli PBP5, PBP6 and DacD, encoded by dacA, dacC and dacD, respectively, share substantial amino acid identity and together constitute~50 % of the total penicillin-binding proteins of E. coli. PBP5 helps maintain intrinsic b-lactam resistance within the cell. To test if PBP6 and DacD play simlar roles, we deleted dacC and dacD individually, and dacC in combination with dacA, from E. coli 2443 and compared b-lactam sensitivity of the mutants and the parent strain. b-Lactam resistance was complemented by wild-type, but not DD-carboxypeptidase-deficient PBP5, confirming that enzymic activity of PBP5 is essential for b-lactam resistance. Deletion of dacC and expression of PBP6 during exponential or stationary phase did not alter b-lactam resistance of a dacA mutant. Expression of DacD during mid-exponential phase partially restored b-lactam resistance of the dacA mutant. Therefore, PBP5DD-carboxypeptidase activity is essential for intrinsic b-lactam resistance of E. coli and DacD can partially compensate for PBP5 in this capacity, whereas PBP6 cannot.
INTRODUCTIONEscherichia coli encodes 12 penicillin-binding proteins (PBPs), four of which (PBP4, -5, -6 and DacD) have been reported to have DD-carboxypeptidase (DD-CPase) activity (Höltje, 1998; Denome et al., 1999;Ghosh et al., 2008). All these proteins are low molecular mass (LMM) PBPs (Ghuysen, 1991) and are dispensable for survival in vitro (Denome et al., 1999). PBP5 and PBP6 are 62 % identical at the amino acid level and share 48 and 47 % identity with DacD, respectively (Baquero et al., 1996). It has been suggested that these proteins might have similar physiological functions based upon their homology but only PBP5 appears to play a prominent role in maintenance of cell shape (Nelson & Young, 2001;Nelson et al., 2002;Ghosh & Young, 2003). PBP5, PBP6 and DacD are primarily expressed in early exponential, stationary and midexponential phases, respectively (Buchanan & Sowell, 1982;Baquero et al., 1996;Santos et al., 2002), which may explain the different roles of these proteins in maintenance of cell shape. The number of PBP5 molecules is also two-to threefold higher than the number of PBP6 molecules in exponentially growing cells (Spratt, 1977;Dougherty et al., 1996).
METHODSBacterial strains and antibiotics. Bacterial strains used in this study were derived from E. coli 2443 and are listed in Table 1. CS18-2K was a gift from Professor Kevin D. Young, University of Arkansas Medical School, AR, USA. The strains were grown in Luria-Bertani (LB) broth, agar (Hi-Media), Muller-Hinton (MH) broth (Hi-Media) and M9-Glucose minimal medium, supplemented with the required amino acids (arginine, proline, leucine and threonine) and thiamine. Chloramphenicol (20 mg ml -1 ), kanamycin (50 mg ml -1 ), tetracycline (25 mg ml -1 ) and ampicillin (50 mg ml -1 ) were added where necessary. Unless otherwise specified, chemicals and reagents were purchased from Sigma. (Table 1). Double and triple mutants were constructed from parents from which the res-npt-res cassette...