Noviherbaspirillum galbum sp. nov., a bacterium isolated from soil

Park, Jinah; Maeng, Soohyun; Lee, Sang Eun; Han, Joo Hyun; Lee, Young Koung; Oh, Jaesung; Jigden, Baigalmaa; Kang, Ju Hyeon; Kim, Myung Kyum

doi:10.1007/s00203-020-02076-7

Cited by 4 publications

(4 citation statements)

References 33 publications

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“…These isolates came from varied environments such as high-altitude aerosols collected at 26 000 m, sediment, rock, root, and water—distinct from the habitats of previously reported type strains. The characteristics of strains ‘ Noviherbaspirillum galbum ’ 17J57-3 [40], ‘ Noviherbaspirillum sedimentum ’ K1S02-23, ‘ Noviherbaspirillum cavernae ’ K2R10-39, and ‘ Noviherbaspirillum rocha ’ K1R23-30 [41] have been described, and they have been deposited in culture collections. The metadata and phenotypic data of these strains are crucial for a comprehensive understanding of the potential diversity, distribution, and ecology of Noviherbaspirillum members.…”

Section: Full-textmentioning

confidence: 99%

“…Transmission electron microscopy imaging was performed at the Institute of Microbiology, Chinese Academy of Sciences (Beijing, PR China). Thermal growth range was determined by incubating strains on NA media at various temperatures, as follows 4,10,15,20,25,28,30,35,37,40,42, and 45 °C. NaCl tolerability was assessed on NA medium with different NaCl concentrations (0-10 %, w/v, at intervals of 0.5 %) for 7 days.…”

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confidence: 99%

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Noviherbaspirillum album sp. nov., an airborne bacteria isolated from an urban area of Beijing, China

Li,

Fang,

Jia

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

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A Gram-negative, ellipsoidal to short-rod-shaped, motile bacterium was isolated from Beijing's urban air. The isolate exhibited the closest kinship with Noviherbaspirillum aerium 122213-3T, exhibiting 98.4 % 16S rRNA gene sequence similarity. Phylogenetic analyses based on 16S rRNA gene sequences and genomes showed that it clustered closely with N. aerium 122213-3T, thus forming a distinct phylogenetic lineage within the genus Noviherbaspirillum. The average nucleotide identity and digital DNA–DNA hybridization values between strain I16B-00201T and N. aerium 122213-3T were 84.6 and 29.4 %, respectively. The respiratory ubiquinone was ubiquinone 8. The major fatty acids (>10 %) were summed feature 3 (C16:1ω6c/C16:1ω7c, 43.3 %), summed feature 8 (C18:1ω7c/C18:1ω6c, 15.9 %) and C12:0 (11.0 %). The polyamine profile showed putrescine as the predominant compound. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, unknown lipids and unknown phosphatidylaminolipids. The phenotypic, phylogenetic and chemotaxonomic results consistently supported that strain I16B-00201T represented a novel species of the genus Noviherbaspirillum, for which the name Noviherbaspirillum album sp. nov. is proposed, with I16B-00201T (=CPCC 100848T=KCTC 52095T) designated as the type strain. Its DNA G+C content is 59.4 mol%. Pan-genome analysis indicated that some Noviherbaspirillum species possess diverse nitrogen and aromatic compound metabolism pathways, suggesting their potential value in pollutant treatment.

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Section: Full-textmentioning

confidence: 99%

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confidence: 99%

Noviherbaspirillum album sp. nov., an airborne bacteria isolated from an urban area of Beijing, China

Li,

Fang,

Jia

et al. 2024

International Journal of Systematic and Evolutionary Microbiology

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“…nov. At the time of writing, the genus Noviherbaspirillum was composed of fifteen validly named species (https://lpsn.dsmz.de/searchword=Noviherbaspirillum). Strains of the genus Noviherbaspirillum have been isolated from diverse environments such as, soil [2][3][4][5], oil-contaminated site [1], grassland soil [6], air [7,8], rice paddy soil [9], human stool [10] and soil from a glacier [11]. Members of the genus Noviherbaspirillum are Gram-stain-negative, rod-shaped, motile by single or many polar flagella [1,6] and chemotaxonomically characterized as having C 16 : 0 , C 16 : 1 ω 7 c/ C 16 : 1 ω 6 c (Summed feature 3) and C 18 : 1 ω 7 c/C 18 : 1 ω 6 c (Summed feature 8) as dominant fatty acids, while diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and phosphatidylcholine (PC) as major polar lipids and ubiquinone 8 (Q-8) as predominant respiratory quinone [1].…”

Section: Introductionmentioning

confidence: 99%

Noviherbaspirillum aridicola sp. nov., isolated from an arid soil in Pakistan

Khan

Saqib

Amin

et al. 2022

International Journal of Systematic and Evolutionary Microbiology

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Strain NCCP-691T was isolated from a soil sample collected from an arid soil in Karak, Khyber Pakhtunkhwa, Pakistan. Phenotypically, the cells were Gram-stain-negative, aerobic and motile rods. The organism was able to grow between 20–40 °C (optimum at 30–37 °C), at pH 5.5–8.0 (optimum at pH 7.0–7.2) and tolerated 0–1.5% NaCl (w/v) (optimum at 0–0.5). Based on 16S rRNA gene sequences, strain NCCP-691T formed a distinct phylogenetic clade with Noviherbaspirillum arenae , N . agri , N. denitrificans and N . autotrophicum (having sequence similarities of 99.0; 98.1; 98.0 and 97.7% respectively). Phylogenetic analyses based on the whole genome sequences confirmed that strain NCCP-691T should be affiliated to the genus Noviherbaspirillum . The average nucleotide identity values compared to other species of Noviherbaspirillum were below 95–96 % and digital DNA–DNA hybridization values were less than 70 %. Chemotaxonomic analyses showed that the strain had ubiquinone-8, as the only respiratory quinine. The major cellular fatty acids were summed feature 3 (C16 : 1 ω 7 c/C16 : 1 ω 6 c, 35.9 %), summed feature 8 (C18 : 1 ω 7 c/C18 : 1 ω 6 c, 26.9 %) and C16 : 0 (22.9 %) and the polar lipid profile was composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine. The genomic DNA G+C content was 65.5 mol% (from draft genome). Genome analyses showed that strain NCCP-691T had terpene and arylpolyene biosynthetic genes clusters and genes related to resistance against heavy metals. Based on phylogenetic analyses, phenotypic features and genomic comparison, it is proposed that strain NCCP-691T is a novel species of the genus Noviherbaspirillum and the name Noviherbaspirillum aridicola sp. nov. is proposed. Type strain is NCCP-691T (=KCTC 52721T=CGMCC 1.13600T).

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“…These species have been isolated from soil, air, oil-contaminated sites, grassland, and volcanic mountain (Lin et al 2013;Sundararaman et al 2016;Chaudhary and Kim 2017;Ishii et al 2017). Recently, "Noviherbaspirillum galbum" and Noviherbaspirillum aerium have been isolated from soil and air samples (Park et al 2020;Xue et al 2020). This study aimed to present the taxonomic description of strain DKR-6 T , which was retrieved from the oil-contaminated experimental soil, and propose the name as Noviherbaspirillum pedocola sp.…”

Section: Introductionmentioning

confidence: 99%

Noviherbaspirillum pedocola sp. nov., isolated from oil-contaminated experimental soil

2021

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An orange-coloured, rod-shaped, and aerobic bacterial strain DKR-6 T was isolated from oil-contaminated experimental soil. The strain was Gram-stain-negative, catalase and oxidase positive, and grew at temperature 10-42 °C, at pH 5.5-9.5, and at 0-3.0% (w/v) NaCl concentration. The phylogenetic analysis and 16S rRNA gene sequence analysis suggested that the strain DKR-6 T was affiliated to the genus Noviherbaspirillum, with the closest species being Noviherbaspirillum massiliense JC206 T (96.3% sequence similarity). The chemotaxonomic profiles revealed the presence of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylcholine as the principal polar lipids; C 16:0 , C 17:0 cyclo, summed feature 3 (C 16:1 ω7c and/or C 16: 1 ω6c), and summed feature 8 (C 18:1 ω7c/or C 18:1 ω6c) as the main fatty acids; and Q-8 as a sole ubiquinone. The DNA G + C content was 61.6%. The polyphasic taxonomic features illustrated in this study clearly implied that strain DKR-6 T represents a novel species in the genus Noviherbaspirillum, for which the name Noviherbaspirillum pedocola sp. nov. is proposed with the type strain DKR-6 T (= KACC 22074 T = NBRC 114727 T ).

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Noviherbaspirillum galbum sp. nov., a bacterium isolated from soil

Cited by 4 publications

References 33 publications

Noviherbaspirillum album sp. nov., an airborne bacteria isolated from an urban area of Beijing, China

Noviherbaspirillum album sp. nov., an airborne bacteria isolated from an urban area of Beijing, China

Noviherbaspirillum aridicola sp. nov., isolated from an arid soil in Pakistan

Noviherbaspirillum pedocola sp. nov., isolated from oil-contaminated experimental soil

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