The amount of energy released by a nuclear recoil ionizing the atoms of the active volume of detection appears "quenched" compared to an electron of the same kinetic energy. This different behavior in ionization between electrons and nuclei is described by the Ionization Quenching Factor (IQF) and it plays a crucial role in direct dark matter searches. For low kinetic energies (below 50 keV), IQF measurements deviate significantly from theoretical predictions and simulations. We report measurements of the IQF for protons with kinetic energies in between 2 keV and 13 keV in 100 mbar of methane. We used the Comimac facility in order to produce the motion of nuclei and electrons of controlled kinetic energy in the active volume, and a NEWS-G SPC to measure the deposited energy. The Comimac electrons are used as reference to calibrate the detector with 7 energy points. A detailed study of systematic effects led to the final results well fitted by IQF (E K ) = E α K / (β + E α K ) with α = 0.69 ± 0.08 and β = 1.31 ± 0.17. In agreement with some previous works in other gas mixtures, we measured less ionizaa