Structure±function relationships of the plastidic ATP/ADP transporter from Arabidopsis thaliana have been determined using site-directed mutants at positions K155, E245, E385, and K527. These charged residues are found within highly conserved domains of homologous transport proteins from plants and bacteria and are located in predicted transmembrane regions. Mutants of K155 to K155E, K155R, or K155Q reduced ATP transport to values between 4 and 16% of wild-type uptake, whereas ADP transport was always less then 3% of the wild-type value. Site-directed mutations in which glutamate at positions 245 or 385 was replaced with lysine, abolished transport. However, conservative (E245D, E385D) or neutral (E245Q, E385Q) replacement at these two positions allowed transport. The fourth reciprocal exchange, K527E, also abolished uptake of both adenylates. K527R and K527Q were unable to transport ATP, but ADP transport remained at 35 and 27%, respectively, of the wild-type activity. There was a 70-fold decreased apparent affinity of K527R for ATP, but only a twofold decrease for ADP. The efflux of ATP, but not ADP, was also greatly reduced in K527R. These observations show strikingly that K527 plays a role in substrate specificity that is manifest in both the influx and efflux components of this antiporter.Keywords: ATP/ADP transporter; structure/function relationship; site-specific mutations; plastid; Arabidopsis thaliana.Transport of solutes across cellular membranes, whether catalyzed by channels or carriers, is necessary for complex metabolism. Although adenine nucleotides, the universal cellular energy currency, fulfil an irreplaceable function, they are viewed as part of the intracellular compartment and often are not transported across biological membranes. However, there are three exceptions to this generalization in which transport of ATP and ADP appropriately occurs: in obligate intracellular bacteria, in mitochondria, and in plastids.In heterotrophic eukaryotic cells, most ATP is synthesized during oxidative phosphorylation and accumulates in the mitochondrial matrix, making it necessary to export this intermediate into the cytosol to fuel anabolic reactions. This transport is mediated by the mitochondrial ADP/ATP carrier (AAC), one of the best-characterized membrane carrier proteins [1±7]. AAC is a member of a large group of transporters comprising the mitochondrial carrier family [3]. These carriers share the same evolutionary ancestor, exhibit an internal sequence triplication of about 100 amino acids, and in the functional state probably form a homodimer from the monomer that has six transmembrane domains [8±10].A second type of adenylate transporter resides in the inner envelope membrane of plant plastids [11±14]. This transporter displays a high structural similarity to the third type of ATP/ADP transporter, that from rickettsiae [15] and chlamydiae [16], obligate intracellular bacteria that grow within eukaryotic cells. Neither plastidic nor bacterial types show homology to the mitochondrial ADP/ATP carrier...