The influences of transmission housing elastic deformations on the vibration gear shafting characteristics are studied. The vibration model of the vehicle transmission system in consideration of the dynamics coupling of the housing and the gear shafting is constructed. Aiming at a vehicle transmission, the mathematical model of the bending and torsional gear shafting vibrations is established based on the lumped mass method. Following the elastic treatment of the box, a comprehensive stiffness model at the bearing considering the housing deformation is proposed to achieve the dynamic coupling between the box and the gear shafting system. Furthermore, the gear shafting vibration characteristics considering housing deformations are obtained by integrating multisource dynamic excitation, which is solved using an iterative method. The results are verified through a bench test. And, it shows that the elastic deformation of the housing aggravates the gear shafting vibration (bending and torsional coupled vibration). The peak frequency mostly remains the same. The maximum speed changes amplitude and associated root mean square value (calculated at the gear position) increase by 55.5% and 59.6%, respectively. Next, the maximum bearing support force and its root mean square value are increased by 63.7% and 97.6%, respectively. Finally, the largest increase in maximum vibration acceleration at the measuring point and the simulated root mean square value are 90% and 63.1%, respectively. It is concluded that the research results provide a theoretical basis for the study of transmission dynamic reliability.