Anisotropic discontinuity exists widely in rock masses of mines, tunnels, slopes, water conservancy and hydropower projects. The shear characteristics of bolted anisotropic rock joints are extremely important for the stability design of engineering rock mass. However, few scholars have studied the bolted anisotropic rock joint. The different rock properties on both sides of the rock joint, especially the different rock strengths, will greatly affect the deformation characteristics and failure mode of the rock mass. Based on this, a series of shear tests were carried out on the bolted anisotropic rock joint under different normal stresses, and the characteristics of shear stress–shear displacement curve, shear strength, failure characteristics of the rock joint and deformation characteristics of the bolt are discussed. λ is defined as the strength ratio of upper and lower rock on the structural surface. The results show that the effect of λ on the shear stress–shear displacement curve is not obvious at the pre-fracture stage. The shear stress–shear displacement curve at the pre-breaking stage of the bolt presents a softening stage when the normal stress is equal to 0.5 MPa, tends to be horizontal when the normal stress is equal to 1 MPa and presents a hardening stage when the normal stress is greater than 1 MPa. After the bolt is broken, the shear stress–shear displacement curve presents a stepped-down descent. With the increase in λ, the breaking shear stress of the bolt increases. Elliptic failure occurs on the surface of the bolted anisotropic rock joint, and the length of the major axis of the ellipse decreases with the increase in λ value and normal stress. The bolts with different λ values of anisotropic rock joint show “Z-shaped” tensile bending deformation characteristics after shear fracture, and the horizontal and vertical components of the bolt deformation decrease with the increase in λ value and normal stress. The fracture shear displacement of the bolt increases with the increase in normal stress and decreases with the increase in λ value. The research results are helpful to further understand the shear mechanical characteristics and differences of bolted rock joints and provide a reference for solving the engineering problems of the composite layered rock mass.