In this study, we aimed to find the targets of resveratrol in nasopharyngeal carcinoma (NPC) by network target prediction and investigate the possible mechanisms through experimental verification. Firstly, resveratrol and NPC-specific targets were combined with protein-protein interactions to construct a systematical resveratrol targets-NPC network. Consistently, molecular docking was performed to predict the molecular determinants of resveratrol against NPC. In order to clarify this point, the anti-cancer effects of resveratrol were investigated in the CNE2 cell lines in vitro and NPC cases in vivo. Functional enrichment results suggested that resveratrol played anti-NPC role mainly through MAPK pathway and the potential targets were MAPK1, MAPK3, STAT3, TP53, PIK3CA, PIK3R1, SRC, MAPK8, RELA and VEGFA. In vitro, resveratrol inhibited proliferation, invasion, migration and eventually induced apoptosis in CNE2 cells on time-and dose-dependent manner. Meanwhile, western blot confirmed that resveratrol exerted apoptotic activity of NPC cells by inhibiting MAPK cell signaling activation. Clinically, Immuno-histochemical staining showed significant differential p-ERK1/2, p-JNK and p-P38 activation between tumor-surrounding and NPC cases. Altogether, our findings identified resveratrol could play potent inhibition and apoptosis on human NPC cells possibly by targeting MAPK pathways and suggested that resveratrol had the potential to be an effective bioactive compound in NPC patients.