Roy etal. [Roy, A., Haziza, C. & Danchin, A. (1983) EMBO J. 2,[791][792][793][794][795][796][797] established that translation of Escherichia coli adenylate cyclase initiates at a UUG codon, and they suggested this might decrease the efficiency of translation. We investigated the effect of varying the initiation codon on the expression of the adenylate cyclase (cya) gene. Using oligonucleotide-directed mutagenesis, we changed the UUG initiation codon to GUG and the more common initiator AUG and assayed for cya gene expression in a number of ways. First, the GUG initiation codon, in place of UUG, doubled cya expression when cya was expressed from the dual cya P1/P2 promoters. The corresponding AUG codon construct was nonviable. Second, when the cya gene was placed under the transcriptional control of the thermoinducible phage A PL promoter, the relative amounts of cya gene product were 1:2:6 for the UUG, GUG, and AUG initiation codons, respectively. Finally, the cya P2 promoter, Shine-Dalgarno sequence, and the DNA corresponding to the first 86 codons of cya were fused to DNA encoding the E. coli galactokinase gene beginning at the second codon. The relative amounts of the fusion polypeptides, which had galactokinase activity, were 1:2:3 for the UUG, GUG, and AUG initiation codons, respectively. These results demonstrate that the cya UUG initiation codon limits cya expression at the level of translation.Translation initiation requires an initiation codon and a properly spaced sequence upstream of the initiation codon that has base pairing potential with the 3' end of the 16S ribosomal RNA (the Shine and Dalgarno or SD sequence) (1, 2). AUG, GUG, and UUG triplets have been shown to stabilize the binding of initiator fMet-tRNA to ribosomes in vitro, suggesting that these three codons may function in vivo as initiation codons (3). Comparison of protein sequence data with the corresponding nucleic acid sequence data for more than 100 genes has shown that, in vivo, all eukaryotic and nearly all prokaryotic genes use the translation initiation codon AUG. However, there are 9 examples of GUG and 3 examples of UUG functioning as initiation codons in Escherichia coli (2, 4). The gene for E. coli adenylate cyclase (cya), the enzyme that synthesizes the important cellular regulator cAMP, is one of the genes that uses the unusual UUG initiation codon (4-6).We have investigated the effect of this unusual initiation codon on cya expression by changing the DNA sequence coding for the UUG initiation codon to ATG and GTG, using oligonucleotide-directed mutagenesis. A comparison of the activities associated with the three codons was made in three different environments: (i) in the normal cya environment, with the cya gene expressed from the dual cya P1/P2 promoters, (it) in a transcription fusion with the cya gene under the transcriptional control of the phage X PL promoter, and (iii) in a gene fusion with the cya gene fused to the E. coli galactokinase (galK) gene to generate a fusion protein with galactokinase activity....