IEEE 802.16e and 802.20 are emerging as two promising technologies for broadband wireless access systems. In order to improve capacity and coverage performance, both of them addressed a Fractional Frequency Reuse (FFR) scheme to combat co-channel interference in multi-cell deployment, which is referred to as FFR16 and FFR20 respectively in this paper. As for the scheme of FFR20, virtual area partition is proposed in this paper, and Fractional Frequency Reuse Factor (FFRF) is achieved by tuning the parameter of signal strength ratio. The optimal combination of resource allocation strategy and signal strength ratio is determined through simulation. In order to compare the performance of FFR16 and FFR20, three evaluation metrics are introduced, including average throughput, outage probability and spectrum efficiency. Simulation results show that outage probability is much lower under FFR20 scheme, which goes beyond the acceptable range when FFRF is smaller than 2.4. The resource utilization efficiencies of both are continuously increasing with regard to FFRF within range [2.4, 3]. Besides, FFR20 outperforms FFR16 under given conditions, in terms of average throughput and spectrum efficiency.