Onto-biology: clarifying the spatiotemporal structure

The inevitability of the bio-molecules: five nitrogenous bases and twenty amino acids

“…Therefore, a new stability concept between neutrally stable and unstable conditions is necessary for a meta-stable system of life, i.e., quasi-stability. [6][7][8][9] Free nitrogenous bases in water often seem to be a column of two identical bases, such as adenine-adenine, which are not in a two-dimensional plane. There are also multimeric complexes such as that of guanines.…”

“…with 3 First order of analysis [6][7][8][9] We then defi ned the deviation from a sphere as y i , which is equal to γ i − 1. Taking the fi rst order of approximation in the Taylor series leads to …”

“…2 Cyto-fl uid dynamics theory based on the γ-ε equation [6][7][8][9][10][11] First, we defi ne a parcel as a fl exible spheroid having a long and a short radius, a(t) and b(t), which are dependent on time t, and are constructed of a bio-molecule such as a base or an amino acid that is surrounded by water molecules. (A parcel consists of a bio-molecule such as a nitrogenous base or amino acid, water molecules hydrated with the bio-molecule, and the immersed mass, which is due to the added mass effect while impulsive deformations start and stop at random.)…”

“…Our previous model, based on traditional fl uid dynamics, [6][7][8][9] has qualitatively revealed the reason why living beings employ only fi ve nitrogenous bases, i.e., two purines of A and G and three pyrimidines of T, C, and U, and also why purines and pyrimidines have a size ratio of about 1.5. However, the model had some gratuitous assumptions, and was also analyzed to the fi rst order of accuracy, which led to qualitative results only.…”