2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2018
DOI: 10.1109/bibm.2018.8621393
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OpenHI - An open source framework for annotating histopathological image

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Cited by 17 publications
(10 citation statements)
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“…Currently, there are a number of WSI-compatible tools available for utilization including OpenHI, ASAP, QuPath, Cytomine, OpenSeadragon, and SlideJ. [ 12 13 28 29 30 31 ] These frameworks are successful implementations of computational pathology to support visualization, annotation, and further pathological analysis. Unfortunately, many of them were being forced to only support proprietary WSI file formats since the free and open ones are not available.…”
Section: Discussionmentioning
confidence: 99%
“…Currently, there are a number of WSI-compatible tools available for utilization including OpenHI, ASAP, QuPath, Cytomine, OpenSeadragon, and SlideJ. [ 12 13 28 29 30 31 ] These frameworks are successful implementations of computational pathology to support visualization, annotation, and further pathological analysis. Unfortunately, many of them were being forced to only support proprietary WSI file formats since the free and open ones are not available.…”
Section: Discussionmentioning
confidence: 99%
“…The original whole slide image is downloaded from TCGA [12]. Experienced pathologists select the appropriate area and use the OpenHI [13] platform for annotation. ccRCC dataset contains 1000 diagnostic areas with 512Ă—512 pixels.…”
Section: A Datasetsmentioning
confidence: 99%
“…1 depicts our data analysis workflow, with the following sections describing the information for each step. OpenHI [15] is an open-source annotation and processing software which specially designed for histopathology images. The pathologists can perform routine operations such as area selection and annotation on this software.…”
Section: B the Proposed Frameworkmentioning
confidence: 99%