Sustainably
enhancing crop production is a global necessity
to
meet the escalating demand for staple crops while sustainably managing
their associated carbon/nitrogen inputs. Leveraging plant-associated
microbiomes is a promising avenue for addressing this demand. However,
studying these communities and engineering them for sustainable enhancement
of crop production have remained a challenge due to limited genetic
tools and methods. In this work, we detail the development of the
Maize Root Microbiome ToolKit (MRMTK), a rapid Modular Cloning (MoClo)
toolkit that only takes 2.5 h to generate desired constructs (5400
potential plasmids) that replicate and express heterologous genes
in Enterobacter ludwigii strain AA4
(Elu), Pseudomonas putida strain AA7 (Ppu), Herbaspirillum
robiniae strain AA6 (Hro), Stenotrophomonas maltophilia strain AA1 (Sma), and Brucella pituitosa strain AA2 (Bpi), which comprise a model maize
root synthetic community (SynCom). In addition to these genetic tools,
we describe a highly efficient transformation protocol (107–109 transformants/μg of DNA) 1 for each
of these strains. Utilizing this highly efficient transformation protocol,
we identified endogenous Expression Sequences (ES; promoter and ribosomal
binding sites) for each strain via genomic promoter trapping. Overall,
MRMTK is a scalable and adaptable platform that expands the genetic
engineering toolbox while providing a standardized, high-efficiency
transformation method across a diverse group of root commensals. These
results unlock the ability to elucidate and engineer plant–microbe
interactions promoting plant growth for each of the 5 bacterial strains
in this study.