Activation of the CiaRH two-component signaling system prevents the development of competence for genetic transformation in Streptococcus pneumoniae through a previously unknown mechanism. Earlier studies have shown that CiaRH controls the expression of htrA, which we show encodes a surface-expressed serine protease. We found that mutagenesis of the putative catalytic serine of HtrA, while not impacting the competence of a ciaRH Ű strain, restored a normal competence profile to a strain having a mutation that constitutively activates the CiaH histidine kinase. This result implies that activity of HtrA is necessary for the CiaRH system to inhibit competence. Consistent with this finding, recombinant HtrA (rHtrA) decreased the competence of pneumococcal cultures. The rHtrA-mediated decline in transformation efficiency could not be corrected with excess competence-stimulating peptide (CSP), suggesting that HtrA does not act through degradation of this signaling molecule. The inhibitory effects of rHtrA and activated CiaH, however, were largely overcome in a strain having constitutive activation of the competence pathway through a mutation in the cytoplasmic domain of the ComD histidine kinase. Although these results suggested that HtrA might act through degradation of the extracellular portion of the ComD receptor, Western immunoblots for ComD did not reveal changes in protein levels attributable to HtrA. We therefore postulate that HtrA may act on an unknown protein target that potentiates the activation of the ComDE system by CSP. These findings suggest a novel regulatory role for pneumococcal HtrA in modulating the activity of a two-component signaling system that controls the development of genetic competence.Competence for genetic transformation in the gram-positive human pathogen Streptococcus pneumoniae is a tightly regulated process, influenced by factors including bacterial cell density, pH, and temperature (5, 57-60). Much has been learned recently about the density-dependent initiation of competence orchestrated by the peptide quorum-sensing system encoded by comCDE and comAB (reviewed in reference 7). The product of comC is a small peptide precursor that is exported from the bacterium and thought to be concurrently processed to form the mature 17-amino-acid competence-stimulating peptide (CSP) by the ComAB transporter (18,19,22). The transmembrane ComD histidine kinase is then stimulated by extracellular CSP and activates its cognate ComE response regulator, which in turn initiates a transcriptional cascade resulting in DNA uptake and recombination (20,43). ComE also promotes the transcription of comCDE and comAB (62), resulting in positive feedback that amplifies signaling through the system. Less is understood, however, about the mechanisms that then shut off competence (7)-even as the bacterial density continues to increase-or the adaptive function of limiting competence expression to such a narrow window of growth.