Developments in space-based hyperspectral sensors, advanced remote sensing, and machine learning can help crop yield measurement, modelling, prediction, and crop monitoring for loss prevention and global food security. However, precise and continuous spectral signatures, important for large-area crop growth monitoring and early prediction of yield production with cutting-edge algorithms, can be only provided via hyperspectral imaging. Therefore, this article used new-generation Deutsches Zentrum für Luft-und Raumfahrt Earth Sensing Imaging Spectrometer (DESIS) images to classify the main crop types (hybrid corn, soybean, sunflower, and winter wheat) in Mezőhegyes (southeastern Hungary). A Wavelet-attention convolutional neural network (WA-CNN), random forest and support vector machine (SVM) algorithms were utilized to automatically map the crops over the agricultural lands. The best accuracy was achieved with the WA-CNN, a feature-based deep learning algorithm and a combination of two images with overall accuracy (OA) value of 97.89%and the user's accuracy producer's accuracy was from 97% to 99%. To obtain this, first, factor analysis was introduced to decrease the size of the hyperspectral image data cube. A wavelet transform was applied to extract important features and combined with the spectral attention mechanism CNN to gain higher accuracy in mapping crop types. Followed by SVM algorithm reported OA of 87.79%, with the producer's and user's accuracies of its classes ranging from 79.62% to 96.48% and from 79.63% to 95.73%, respectively. These results demonstrate the potentiality of DESIS data to observe the growth of different crop types and predict the harvest volume, which is crucial for farmers, smallholders, and decision-makers.