Sphingomonas paucimobilis B90A is able to degrade the ␣-, -, ␥-, and ␦-isomers of hexachlorocyclohexane (HCH). It contains the genes linA, linB, linC, linD, linE, and linR, which have been implicated in HCH degradation. In this study, dynamic expression of the lin genes was measured in chemostat-grown S. paucimobilis B90A by RNA dot blot hybridization and real-time reverse transcriptase PCR upon exposure to a pulse of different HCH isomers. Irrespective of the addition of HCH, linA, linB, and linC were all expressed constitutively. In contrast, linD and linE were induced with ␣-HCH (2 mg/liter) and ␥-HCH (7 mg/liter). A sharp increase in mRNA levels for linD and linE was observed from 10 to 45 min after the addition of ␣-or ␥-HCH. Induction of linD and linE was not detectable upon the addition of 0.7 mg of ␥-HCH per liter, although the compound was degraded by the cells. The addition of -HCH (5 mg/liter) or ␦-HCH (20 mg/liter) did not lead to linE and linD induction, despite the fact that 50% of the compounds were degraded. This suggests that degradation of -and ␦-HCH proceeds by a different pathway than that of ␣-and ␥-HCH.Hexachlorocyclohexane (HCH) has been extensively used for the control of insect pests on agriculturally important crops, seeds, and vegetables, in forestry, and in vector control (34). Mainly two forms of HCH, lindane (␥-HCH) and a technical mixture of all isomers, have been applied. Technical grade HCH (33) largely consists of ␣-HCH (60 to 70%), with -HCH (5 to 12%), ␥-HCH (10 to 15%), and ␦-HCH (6 to 10%) (16). As a result of the extensive use of lindane dust and technical HCH over the years and despite the recent ban on the use of HCH, several countries are currently faced with two very serious problems: (i) soil contamination with small amounts of HCH and (ii) highly contaminated sites where lindane was produced and purified or disposed of (5, 25).Although HCH is persistent and difficult to biodegrade, a few microorganisms have been isolated which can degrade one or more HCH isomers under aerobic conditions (27,29,31). Most of the strains, such as Sphingomonas paucimobilis UT26, degrade ␣-and ␥-HCH but do not degrade -HCH. Only one strain has been described, S. paucimobilis B90A (9), the parent strain of strain B90 (14, 15), that is able to degrade the four ␣-, -, ␥-, and ␦-HCH isomers, although with different rates and not to completion for the -and ␦-HCH isomers. The degradation pathway for ␥-HCH is well established from work on S. paucimobilis strain UT26 (20-24). Degradation of ␥-HCH is mediated by the products of the so-called lin genes (23). It is assumed that ␣-HCH is degraded through the same pathway, but this has not been proven for -and ␦-HCH. S. paucimobilis strains UT26 and B90A have very similar lin gene sequences and organizations (9,15). In contrast to typical degradation pathways in, for example, Pseudomonas or Ralstonia, where very long polycistronic operons are common (10,17,36), the genes for lindane degradation in S. paucimobilis are not organized within one or...