Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOFMS) is used to obtain fast and accurate determinations of molecular mass, but quantitative determinations are generally made by other techniques. In this study we illustrate the practical utility of automated MALDI-TOFMS as a tool for quantifying a diverse array of biomolecules covering an extensive molecular weight range, and present in biological extracts and fluids. Growth hormone was measured in rat pituitary tissue; insulin in human pancreatic tissue; homovanillic acid in human urine; and LVV-hemorphin-7, epinephrine and norepinephrine in human adrenal and pheochromocytoma tissues. Internal standards including compounds of similar molecular weight, structural analogs or isotopomers were incorporated into each analysis. We report on the current practical limitations of quantitative MALDI-TOFMS and highlight some of the potential benefits of this technique as a quantitative tool. (J Am Soc Mass Spectrom 2002, 13, 1015-1027) © 2002 American Society for Mass Spectrometry S ince its inception and commercial availability, the versatility of MALDI-TOFMS has been demonstrated convincingly by its extensive use for qualitative analysis. For example, MALDI-TOFMS has been employed for the characterization of synthetic polymers [1,2], peptide and protein analysis [3][4][5], DNA and oligonucleotide sequencing [6 -8], and the characterization of recombinant proteins [9,10]. Recently, applications of MALDI-TOFMS have been extended to include the direct analysis of biological tissues and single cell organisms with the aim of characterizing endogenous peptide and protein constituents [11][12][13][14][15][16][17][18].The properties that make MALDI-TOFMS a popular qualitative tool-its ability to analyze molecules across an extensive mass range, high sensitivity, minimal sample preparation and rapid analysis times-also make it a potentially useful quantitative tool. MALDI-TOFMS also enables non-volatile and thermally labile molecules to be analyzed with relative ease. It is therefore prudent to explore the potential of MALDI-TOFMS for quantitative analysis in clinical settings, for toxicological screenings, as well as for environmental analysis. In addition, the application of MALDI-TOFMS to the quantification of peptides and proteins is particularly relevant. The ability to quantify intact proteins in biological tissue and fluids presents a particular challenge in the expanding area of proteomics and investigators urgently require methods to accurately measure the absolute quantity of proteins.While there have been reports of quantitative MALDI-TOFMS applications, there are many problems inherent to the MALDI ionization process that have restricted its widespread use [19 -39]. These limitations primarily stem from factors such as the sample/matrix heterogeneity that is believed to contribute to the large variability in observed signal intensities for analytes, the limited dynamic range due to detector saturation, and difficulties associated ...