44 pages, In "Heat Transfer - Mathematical Modelling, Numerical Methods and Information Technology", A. Belmiloudi (Ed.), InTech (Open Access Publisher), Vienna, 2011 - ISBN 978-953-307-550-1International audienceMotivated by topics and issues critical to human health and safety of treatment, the problem studied in this chapter derives from the modeling and stabilizing control of the transport of thermal energy in biological systems with porous structures. First, the modeling of thermal transport by perfusion within the framework of the theory of porous media is presented and the governing equations are established. The thermal processes within the tissues are predicted by using some generalized uncertain evolutive nonlinear bioheat transfer type models with nonlinear Robin boundary conditions, by taking into account porous structures and directional blood flow. Afterwards the existence, the uniqueness and the regularity of the solution of the state equation are presented as well as stability and maximum principle under extra assumptions. Second, we introduce the initial perturbation problem and give the existence and uniqueness of the perturbation solution and obtain a stability result. Third, the real-time identification and robust stabilization problems are formulated, in different situations, in order to reconstitute simultaneously the blood perfusion rate, the porosity parameter, the heat transfer parameter, the distributed energy source terms and the heat flux due to the evaporation, which affect the effects of thermal physical properties on the transient temperature of biological tissues, and to control and stabilize the desired online temperature and thermal damage provided by MRI measurements. Because, it is now well-known that a controlled and stabilized temperature field does not necessarily imply a controlled and stabilized tissue damage. This work includes results concerning the existence of the optimal solutions, the sensitivity problems, adjoint problems, necessary optimality conditions and optimization problems. Next, we analyse the case when data are measured in only some points in space-time domain, and the case where the body Ω is constituted by different tissue types which occupy finitely many disjointed subdomains. Some numerical strategies, based on adjoint control optimization , in order to perform the robust control, are also discussed. Finally, control and stabilization problems for a coupled thermal, radiation transport and coagulation processes modeling the laser-induced thermotherapy in biological tissues, during cancer treatment, are analyzed