Pear fruit brown rot, caused by Monilia yunnanensis, affects pear fruit yields and quality. The present study determined Trichoderma longibrachiatum T6 (T6) peptaibols as a biological control alternative to synthetic fungicides and assessed its efficacy against M. yunnanensis through dual plate culture and surface spraying at different concentrations. T6 peptaibols effectively inhibited M. yunnanensis growth, achieving an 85.99% inhibitory rate at 1250 µg/mL after inoculation on PDA medium for 5 days, and 84.57% control efficacy on pear fruit with the same concentration at 6 days. Treatment with T6 peptaibols significantly decreased the average contents of malondialdehyde (MDA) and hydrogen peroxide (H2O2), as well as electrolyte leakage, by 31.99%, 27.93%, and 21.00% from days 1 to 9 post-inoculation, respectively, in comparison to the negative control. Additionally, the average antioxidant enzyme activities of catalase (CAT), superoxide dismutase (SOD), peroxidase (POD) and polyphenol oxidase (PPO) increased by 86.27%, 56.76%, 25.94%, and 47.88%, respectively; the average defense enzyme activities of phenylalanine ammonia-lyase (PAL), lipoxygenase (LOX), chitinase (CHI), and β-1,3-glucanase (β-Glu) increased by 63.00%, 55.70%, 26.19%, and 16.34%, respectively. Moreover, the expression levels of the antioxidant and defense-related genes (CAT, SOD, POD, PPO, CHI, LOX, PAL, β-Glu) were significantly upregulated by 2.80, 2.81, 3.03, 2.79, 3.37, 2.49, 2.73, and 1.83-folds at 3 days after inoculation compared to the negative control. Thus, T6 peptaibols effectively reduced the pathogen infection through growth inhibition and antioxidant defenses, thereby boosting fruit immunity.