There is significant interest in the development of antimicrobial
compounds to overcome the increasing bacterial resistance to conventional
antibiotics. Studies have shown that naturally occurring and de novo-designed
antimicrobial peptides could be promising candidates. MSI-594 is a
synthetic linear, cationic peptide that has been reported to exhibit
a broad spectrum of antimicrobial activities. Investigation into how
MSI-594 disrupts the cell membrane is important for better understanding
the details of this antimicrobial peptide (AMP)’s action against
bacterial cells. In this study, we used two different synthetic lipid
bilayers: zwitterionic 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
(POPC) and anionic 7:3 POPC/1-palmitoyl-2-oleoyl-sn-glycero-3-phospho(1′-rac-glycerol) (POPG).
Sum frequency generation (SFG) vibrational spectroscopy and attenuated
total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR)
were used to determine the orientations of MSI-594 and its analogue
MSI-594A associated with zwitterionic POPC and anionic 7:3 POPC/POPG
lipid bilayers. The simulated ATR-FTIR and SFG spectra using nuclear
magnetic resonance (NMR)-determined structures were compared with
experimental spectra to optimize the bent angle between the N- (1–11)
and C- (12–24) termini helices and the membrane orientations
of the helices; since the NMR structure of the peptide was determined
from lipopolysaccharide (LPS) micelles, the optimization was needed
to find the most suitable conformation and orientation in lipid bilayers.
The reported experimental results indicate that the optimized MSI-594
helical hairpin structure adopts a complete lipid bilayer surface-bound
orientation (denoted “face-on”) in both POPC and 7:3
POPC/POPG lipid bilayers. The analogue peptide, MSI-584A, on the other
hand, exhibited a larger bent angle between the N- (1–11) and
C- (12–24) termini helices with the hydrophobic C-terminal
helix inserted into the hydrophobic region of the bilayer (denoted
“membrane-inserted”) when interacting with both POPC
and 7:3 POPC/POPG lipid bilayers. These experimental findings on the
membrane orientations suggest that both peptides are likely to disrupt
the cell membrane through the carpet mechanism.